CX295831

Overview
NameCX295831
Unique NameCX295831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: HECW1_HUMAN (E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens GN=HECW1 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 67/192 (34.90%), Postives = 117/192 (60.94%), Query Frame = 2
Query:   38 APRLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDL-KGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNA-SFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDAD 607
            +P   DF+ K   F  K+  +      G +++ +RR ++LE ++NQ+   S ++L + +L V F GEEG+D  G +RE++ LLS+ +F+    LF    N+  + Q +P S +   HL +F+F GR++  AL    LLD  FTR FYK +L +     D+E +D +++++L+WM +N+++DI DLTF+++ +
Sbjct: 1221 SPYRRDFEAKLRNFYRKLEAKGFGQGPGKIKLIIRRDHLLEGTFNQVMAYSRKELQRNKLYVTFVGEEGLDYSGPSREFFFLLSQELFNPYYGLFEYSANDTYTVQISPMSAFVENHLEWFRFSGRILGLALIHQYLLDAFFTRPFYKALLRLPCDLSDLEYLDEEFHQSLQWMKDNNITDILDLTFTVNEE 1412          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: HECW1_MOUSE (E3 ubiquitin-protein ligase HECW1 OS=Mus musculus GN=Hecw1 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.036e-26
Identity = 65/192 (33.85%), Postives = 117/192 (60.94%), Query Frame = 2
Query:   38 APRLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDL-KGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNA-SFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMDAD 607
            +P   DF+ K   F  K+  +      G +++ +RR ++LE ++NQ+   S ++L + +L + F GEEG+D  G +RE++ LLS+ +F+    LF    N+  + Q +P S +   +L +F+F GR++  AL    LLD  FTR FYK +L +     D+E +D +++++L+WM +N+++DI DLTF+++ +
Sbjct: 1219 SPYRRDFEAKLRNFYRKLEAKGFGQGPGKVKLIIRRDHLLEGTFNQVMAYSRKELQRNKLYITFVGEEGLDYSGPSREFFFLLSQELFNPYYGLFEYSANDTYTVQISPMSAFVENYLEWFRFSGRILGLALIHQYLLDAFFTRPFYKGLLKLPCDLSDLEYLDEEFHQSLQWMKDNNITDILDLTFTVNEE 1410          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: PUB2_SCHPO (E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe GN=pub2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 61/160 (38.12%), Postives = 96/160 (60.00%), Query Frame = 2
Query:  125 LRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT-TVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWMLENDVSDIPDLTFSMD 601
            L++ V RA   ED+Y+ +   S  D+K +L + F+ E+G+D GG++RE++ +LS  IF+ G  LF     +N   Q +P S    +  SYF+FVGRV+  A++  + LDV F   FYK +L   +   D++ VD  YY++LKW+  NDV +   L FS++
Sbjct:  317 LQLKVSRATTFEDAYDIISKLSVSDMKKKLLIRFRNEDGLDYGGVSREFFYILSHAIFNPGYSLFEYATDDNYGLQISPLSSVNPDFRSYFRFVGRVMGLAIYHRRYLDVQFVLPFYKRILQKPLCLEDVKDVDEVYYESLKWIKNNDVDESLCLNFSVE 476          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: K0317_MOUSE (Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.974e-22
Identity = 67/198 (33.84%), Postives = 106/198 (53.54%), Query Frame = 2
Query:   56 FDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFT--TVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDG-------QLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKN-LKWMLENDVSDIPDLTFSMDADEEKH 619
            F +K  +F+ ++RQ H +     + + V R  +LE S    R  S  D      V FQ EE +D GG  REW++L+ + +FD  + LF   T  N A   PNPN       L  ++F GR+V K L++        QL+   FTRSF   ++G+++ Y   E  DP++YK+ + ++L ND+S++ +L F+    EEK+
Sbjct:  439 FQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFSISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTSQLFARFTDSNQALVHPNPNRPAHL-RLKMYEFAGRLVGKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEM-ELVFA----EEKY 630          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: K0317_HUMAN (Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22
Identity = 67/198 (33.84%), Postives = 106/198 (53.54%), Query Frame = 2
Query:   56 FDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNN--ASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDG-------QLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKN-LKWMLENDVSDIPDLTFSMDADEEKH 619
            F +K  +F+ ++RQ H +     + + V R  +LE S    R  S  D      V FQ EE +D GG  REW++L+ + +FD    LFT   +N  A   PNPN       L  ++F GR+V K L++        QL+   FTRSF   ++G+++ Y   E  DP++YK+ + ++L ND+S++ +L F+    EEK+
Sbjct:  439 FQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFSISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTNQLFTRFSDNNQALVHPNPNRPAHL-RLKMYEFAGRLVGKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEM-ELVFA----EEKY 630          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20
Identity = 62/193 (32.12%), Postives = 110/193 (56.99%), Query Frame = 2
Query:   38 APRLIDFDNKRAYFRSKIRQQHEQHLSGPL----RISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGE-----EGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNASFQPNPNS-VYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTY-HDIEAVDPDYYKNLKWM--LENDVSDI 577
            AP LI F ++   F +++    + H S  +    R  +RR ++LED+YNQ+   S  DL+  + V F  E      GID GG+ +++ + ++R  FD    LF    ++  + PNP S +   +HL +F F+G ++AKA+F+G L+D+ F  +F+   L  K  Y +D+ ++DP+ Y++L ++   + D+SD+
Sbjct:  634 APFLIPFTSRVKIFTTQLATARQSHGSQGIFARNRFRIRRDHILEDAYNQMSALSEDDLRSSIRVTFVNELGVEEAGIDGGGIFKDFMEKITRAAFDVQYGLFKETADHMLY-PNPGSGMIHEQHLQFFHFLGSLLAKAMFEGILVDIPFA-TFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKRYKGDISDL 824          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: MUG30_SCHPO (Probable E3 ubiquitin-protein ligase mug30 OS=Schizosaccharomyces pombe GN=mug30 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 66/216 (30.56%), Postives = 117/216 (54.17%), Query Frame = 2
Query:   38 APRLIDFDNKRAYFRSKIRQQHEQHLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLGVKVTYHDIEAVDPDYYKNLKWML--ENDVSDIPDLTFSMDADEEKHILYEKTEVTDYELNLEEEHR 679
            A R ++   + A+F S + + + +     L I VRR  +LEDS  Q+  R+ +D +  L V F GEEGIDAGGL REW  LL+R +F     LF     ++++    N  ++++ + Y+   G ++  A+ +   LDV   R+FYK +L + ++++D++   P  Y+ LK +L  E DV +   L F+++    +     + +    EL+++ E+R
Sbjct:  407 ARRKMEIKAREAFFSSILSKMNVEPY---LMIRVRRDRLLEDSLRQINDRN-KDFRKALKVEFLGEEGIDAGGLKREWLLLLTRKVFSPEFGLFVNCEESSNYLWF-NYSHRSKEIDYYHMSGILMGIAIHNSINLDVQMPRAFYKKLLQLPLSFNDLDDFQPSLYRGLKELLLFEGDVKNTYGLNFTINLKAVEGFRTVELKEGGSELSVDNENR 617          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: UBE3B_XENTR (Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20
Identity = 63/209 (30.14%), Postives = 110/209 (52.63%), Query Frame = 2
Query:   41 PRLIDFDNKRAYFRSKIRQQHEQ------HLSGP--LRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQG-----EEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLG--VKVTYHDIE---AVDPDYYKNLKWMLENDVSDIPDLTFSMDADEE 613
            P +I   N+   FR+ + ++ E+      + + P    I++RR+ +LED Y+QLR  S   +KG + V F       E GID  G+ +E+ + + + +FD    LF T  +     P+P S     +L  F+FVG+++ KA+++G ++DV F   F   +LG    + Y  ++   ++D ++YKNL  +   D  DI DL  ++  DE+
Sbjct:  649 PHVIPHKNRVLLFRNIVTKEKEKLGLVETNTASPHVTHITIRRSRMLEDGYDQLRQLSQNAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSSGDRLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQLLGHHHSIFYSSVDELPSLDSEFYKNLTSIKRYD-GDISDLGLTLSYDED 856          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: UBE3B_MOUSE (Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20
Identity = 64/212 (30.19%), Postives = 109/212 (51.42%), Query Frame = 2
Query:   41 PRLIDFDNKRAYFRSKIRQQHEQ-----------HLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQG-----EEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLG--VKVTYHDIE---AVDPDYYKNLKWMLENDVSDIPDLTFSMDADEE 613
            P ++   N+   FR+ + ++ E+           H++    I++RR+ +LED Y QLR  S   +KG + V F       E GID  G+ +E+ + + + +FD    LF T   +    P+P S     +L  F+FVG+++ KA+++G ++DV F   F   MLG    V Y  ++   ++D ++YKNL  +   D  DI DL  ++  DE+
Sbjct:  647 PHVVPHKNRVLLFRNMVIKEKEKLGLVETSSASPHVT---HITIRRSRMLEDGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSGDERLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQMLGHHHSVFYSSVDELPSLDSEFYKNLTSIKRYD-GDIADLGLTLSYDED 854          
BLAST of CX295831 vs. ExPASy Swiss-Prot
Match: UBE3B_HUMAN (Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20
Identity = 64/212 (30.19%), Postives = 109/212 (51.42%), Query Frame = 2
Query:   41 PRLIDFDNKRAYFRSKIRQQHEQ-----------HLSGPLRISVRRAYVLEDSYNQLRMRSTQDLKGRLNVHFQG-----EEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNNASFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHMLG--VKVTYHDIE---AVDPDYYKNLKWMLENDVSDIPDLTFSMDADEE 613
            P +I   N+   FR+ + ++ E+           H++    I++RR+ +LED Y QLR  S   +KG + V F       E GID  G+ +E+ + + + +FD    LF T   +    P+P S     +L  F+FVG+++ KA+++G ++DV F   F   +LG    V Y  ++   ++D ++YKNL  +   D  DI DL  ++  DE+
Sbjct:  645 PHVIPHKNRVLLFRTMVTKEKEKLGLVETSSASPHVT---HITIRRSRMLEDGYEQLRQLSQHAMKGVIRVKFVNDLGVDEAGIDQDGVFKEFLEEIIKRVFDPALNLFKTTSGDERLYPSPTSYIHENYLQLFEFVGKMLGKAVYEGIVVDVPFASFFLSQLLGHHHSVFYSSVDELPSLDSEFYKNLTSIKRYD-GDITDLGLTLSYDED 852          
The following BLAST results are available for this feature:
BLAST of CX295831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
HECW1_HUMAN2.405e-2734.90E3 ubiquitin-protein ligase HECW1 OS=Homo sapiens ... [more]
HECW1_MOUSE2.036e-2633.85E3 ubiquitin-protein ligase HECW1 OS=Mus musculus ... [more]
PUB2_SCHPO5.924e-2638.13E3 ubiquitin-protein ligase pub2 OS=Schizosaccharo... [more]
K0317_MOUSE3.974e-2233.84Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 ... [more]
K0317_HUMAN5.190e-2233.84Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 ... [more]
UPL6_ARATH1.278e-2032.12E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
MUG30_SCHPO2.848e-2030.56Probable E3 ubiquitin-protein ligase mug30 OS=Schi... [more]
UBE3B_XENTR3.719e-2030.14Ubiquitin-protein ligase E3B OS=Xenopus tropicalis... [more]
UBE3B_MOUSE3.719e-2030.19Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ub... [more]
UBE3B_HUMAN3.719e-2030.19Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UB... [more]

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Properties
Property NameValue
Genbank descriptionC05076D02SK DroRLeaf1 Citrus clementina cDNA clone C05076D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295831 ID=CX295831; Name=CX295831; organism=Citrus clementina; type=EST; length=738bp
TAGTTTGTTGGAGAAATCACTATCTATGATGCTGAAGGCCCCAAGGCTGA
TTGACTTTGACAACAAGAGAGCGTATTTCCGCTCAAAAATAAGGCAACAA
CATGAACAACACCTCTCAGGCCCACTGCGAATCAGTGTTCGACGGGCATA
TGTTTTAGAGGATTCATACAATCAACTGCGGATGCGGTCCACTCAAGATT
TAAAAGGGAGATTGAATGTGCATTTTCAAGGTGAAGAGGGTATTGATGCT
GGAGGTCTGACGAGAGAATGGTATCAATTACTGTCCAGGGTTATATTCGA
CAAAGGGGCGTTGCTTTTCACCACTGTGGGCAACAATGCATCTTTTCAGC
CAAACCCCAATTCTGTCTACCAAACGGAGCATCTCTCGTACTTCAAATTT
GTGGGCCGTGTGGTTGCCAAGGCTCTATTTGATGGTCAGCTTTTGGATGT
TCATTTTACTAGGTCCTTCTATAAGCACATGCTAGGTGTAAAGGTGACTT
ATCATGACATAGAGGCTGTTGACCCTGATTATTACAAGAATTTGAAGTGG
ATGCTGGAGAATGATGTGAGTGACATACCTGACCTGACATTCAGCATGGA
TGCTGATGAGGAAAAGCACATTCTGTATGAGAAAACTGAGGTTACTGATT
ATGAGCTTAACCTGGAGGAAGAACATAGGGTTACGGAAGAACAAACATGA
GTATGTAGACCTGTGGCTGATCATATCTGACAAATGCA
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