CX296370

Overview
NameCX296370
Unique NameCX296370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.114e-44
Identity = 83/147 (56.46%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG+    G + V+LAE++GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN R
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAESLEQAYQSGLIGTIRDNGYRLEHGRLNVRLAEAFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMDVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNER 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.938e-44
Identity = 77/147 (52.38%), Postives = 113/147 (76.87%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D K F+ +L +S+NY+R+GFG  E  + +MN EY S +I+++++N +++  GNV + LA+++GFCWGVERAV +AYE R+ FP+E IWITNE+IH+P+VN+RLE+M ++ I V  G+K F  +  GDVV+LPAFGA+V EM  LN+R
Sbjct:    2 DTKAFKRSLQQSENYHRKGFGQTEAAMGVMNTEYQSSLIQQIRQNNYQWKQGNVTIHLAQAFGFCWGVERAVAMAYETRQHFPKESIWITNELIHHPSVNQRLEQMEIKFIEVINGQKDFSQIKSGDVVILPAFGASVSEMQLLNDR 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.938e-44
Identity = 79/147 (53.74%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ +
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEK 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.938e-44
Identity = 79/147 (53.74%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D K F+  L  S+NYNR+GFGH+ E    +  EY S +I+++++  +    G+V ++LA+++GFCWGVERAV +AYE RK FP E+IWITNEIIHNP+VN+R++EM V  IPVE G K F VV   DVV+LPAFGA+V+EM  L+ +
Sbjct:    2 DTKTFKRTLQHSENYNRKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFCWGVERAVAMAYETRKHFPTERIWITNEIIHNPSVNQRMQEMQVGFIPVEAGNKDFSVVGNNDVVILPAFGASVQEMQLLSEK 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.062e-44
Identity = 83/147 (56.46%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D   F+ +L  S+ YNRRGFG  EE  E + Q Y S +I  +++NG++ T G + V LAE++GFCWGVERAV +AYE R+ +P E++WITNEIIHNP+VN  L EM V  IPVEEG K F  V  GDVV+LPAFGA V+EM  LN R
Sbjct:    2 DTHAFKRSLHHSERYNRRGFGRAEEVAENLEQAYQSGLIGTIRDNGYKLTHGRLNVHLAEAFGFCWGVERAVAMAYETRRHYPSERLWITNEIIHNPSVNDHLREMDVLFIPVEEGVKDFSGVTSGDVVILPAFGATVQEMQLLNER 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPW (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH7803) GN=ispH PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.062e-44
Identity = 82/147 (55.78%), Postives = 103/147 (70.07%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D   F+ +L  SD YNRRGFG  EE    + Q Y S +I  +++NG+    G ++V+LA+ +GFCWGVERAV +AYE RK +P E++WITNEIIHNP+VN  L EM VQ IPVE+G K F  V  GDVV+LPAFGA V+EM  LN R
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRAEEVAGSLEQAYQSSLIGSIRDNGYRLNHGRLQVRLAKDFGFCWGVERAVAMAYETRKHYPSERLWITNEIIHNPSVNDHLREMNVQFIPVEQGVKDFSGVTSGDVVILPAFGATVQEMQLLNER 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.546e-43
Identity = 82/148 (55.41%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPV-EEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D K F+ +L  S+ Y+R+GFGH+ E  E++  EY S +I++++ENG  +  G V ++LAE++GFCWGVERAV +AYE R+ FP E+IWITNEIIHNP+VN+ L EM V+ IPV E+G+K F VV   DVV+LPAFGA+V+EM  LN++
Sbjct:    2 DTKAFKRSLHSSNQYHRKGFGHEAEVTEMLRFEYQSSLIQQIRENGNRFQRGEVTIQLAEAFGFCWGVERAVALAYETRQHFPTERIWITNEIIHNPSVNQNLREMQVEFIPVDEQGQKDFSVVAGEDVVILPAFGASVQEMQLLNDK 149          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_NOSP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.497e-43
Identity = 77/147 (52.38%), Postives = 111/147 (75.51%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D K F+ +L  S+NYNR+GFGH+ E    +  EY S++I+++++  +    G+V ++LA+++GFCWGVERAV +AYE R+ FP E IWITNEIIHNP+VN+R++EM V+ IP+E   K F VV  GDVV+LPAFGA+V+EM  L+++
Sbjct:    2 DTKAFKRSLQHSENYNRKGFGHQAEVATQLQSEYQSNLIQEIRDRNYILQRGDVTIRLAQAFGFCWGVERAVAMAYETRQHFPTEHIWITNEIIHNPSVNQRMQEMEVEFIPIEGKNKDFSVVGTGDVVILPAFGASVQEMQILHDK 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.308e-42
Identity = 82/147 (55.78%), Postives = 103/147 (70.07%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D   F+ +L  SD YNRRGFG  +E    + Q Y S +I  +++NG+  T G +KV+LAE++GFCWGVERAV +AYE R+ +P+E+IWITNEIIHNP+VN  L EM V  I VE G K F  V  GDVV+LPAFGA V+EM  LN R
Sbjct:    2 DTHAFKRSLHHSDRYNRRGFGRADEVAGSLEQAYQSSLIGSIRDNGYSLTHGRLKVRLAEAFGFCWGVERAVAMAYETRRHYPQERIWITNEIIHNPSVNDHLREMDVLFISVEGGVKDFSGVATGDVVILPAFGATVQEMQLLNER 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.889e-41
Identity = 76/147 (51.70%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF YT G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V+EM  L+ +
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATVQEMKLLHEK 148          
The following BLAST results are available for this feature:
BLAST of CX296370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_SYNSC3.114e-4456.464-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP86.938e-4452.384-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT6.938e-4453.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP6.938e-4453.744-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS99.062e-4456.464-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPW9.062e-4455.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP41.546e-4355.414-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_NOSP74.497e-4352.384-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS31.308e-4255.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS1.889e-4151.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC05139G03SK FerrChloL1 Citrus clementina cDNA clone C05139G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296370 ID=CX296370; Name=CX296370; organism=Citrus clementina; type=EST; length=671bp
ACGAGGCTTTTGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCA
TCATGGCGACGACTCTGCAATTCTGCCGTGTTTGCGCGCGAACTGACATA
GGTTCGCGCAGTAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAG
GCCTGTGATCGTCAGGTGCTCCGGTGAAAAATCGCCGAGCTCGGCGGCGG
CTATTGGTGCCGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGA
AGTGATAATTACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGA
GCTCATGAATCAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGA
ATGGATTTGAGTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCA
TATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGC
AAGAAAACAGTTTCCTGAGGAGAAGATCTGGATTACCAATGAAATCATAC
ACAATCCAACTGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATA
CCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTAAATAAGGGTGATGT
TGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGAAATGGTGACTCTGA
ATAACAGAATGTACAGATTGT
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