CX296370

Overview
NameCX296370
Unique NameCX296370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROM0 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=ispH PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.889e-41
Identity = 76/147 (51.70%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF YT G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V+EM  L+ +
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYTKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATVQEMKLLHEK 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROMM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispH PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 78/147 (53.06%), Postives = 102/147 (69.39%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + F+ +L  S+ YNRRGFG   E    + + Y S +I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E+IWITNEIIHNP+VN+ L EM V  I  E G K F  VN GDVV+LPAFGA V+EM  L+ R
Sbjct:    2 DTQAFKRSLHHSERYNRRGFGRANEVASNLEKAYQSSLIGSIRDNGYVLQHGRLQVKLAEAFGFCWGVERAVAMAYETRRHYPSERIWITNEIIHNPSVNEHLREMDVLFIHAEGGVKDFSCVNDGDVVILPAFGATVQEMELLHER 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 75/147 (51.02%), Postives = 103/147 (70.07%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  +++NGF Y  G + +KLA+++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V+EM  L+ +
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLISSIRDNGFTYNKGRLNIKLAKAFGFCWGVERAVAMAYETRRHYPNENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSNGDVVILPAFGATVQEMKLLHEK 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_TRIEI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=ispH PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.089e-40
Identity = 72/147 (48.98%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D K F   L +S+NYNR+GFGH +E   LM   Y S++I++++EN +    G V +KLA+++GFCWGVER+V +AYE R+ FP ++IWI+ E+IHNP+VN+ +++M ++ IPV +G+K F V    DVV+LPAFGA+V+EM  L ++
Sbjct:    2 DTKAFTRALKKSENYNRQGFGHAQEVATLMQSAYKSNLIQQIRENNYTLQRGEVTIKLAKTFGFCWGVERSVAMAYETRQHFPNQQIWISYELIHNPSVNQDMKDMEIKFIPVIDGQKDFSVAGNNDVVILPAFGASVQEMQILKDK 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROM3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=ispH PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.563e-40
Identity = 77/147 (52.38%), Postives = 102/147 (69.39%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + F+ +L  S+ YNRRGFG   E    + + Y S +I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E+IWITNEIIHNP+VN+ L EM V  I  E G K F  V+ GDVV+LPAFGA V+EM  L+ R
Sbjct:    2 DTQAFKRSLHHSERYNRRGFGRANEVASNLEKAYQSSLIGSIRDNGYVLQHGRLQVKLAEAFGFCWGVERAVAMAYETRRHYPSERIWITNEIIHNPSVNEHLREMDVLFIHAEGGVKDFSCVSDGDVVILPAFGATVQEMELLHER 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.654e-40
Identity = 78/147 (53.06%), Postives = 103/147 (70.07%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + F+  L +SD YNRRGFG   +  + + + Y S +I  ++ENG     G +KVKLAE++GFCWGVER+V +AYE RK +P E+IWITNEIIHNP+VN  L +M V  I  E+G K F VV  GDVV+LPAFGA V++M  L++R
Sbjct:    2 DTQAFKQTLHKSDRYNRRGFGSANKRAQALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFGATVQDMKLLHDR 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.654e-40
Identity = 78/147 (53.06%), Postives = 103/147 (70.07%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + F+  L +SD YNRRGFG   +  + + + Y S +I  ++ENG     G +KVKLAE++GFCWGVER+V +AYE RK +P E+IWITNEIIHNP+VN  L +M V  I  E+G K F VV  GDVV+LPAFGA V++M  L++R
Sbjct:    2 DTQAFKQTLHKSDRYNRRGFGSANKRAQALAEAYQSGLIGSIRENGNLLEHGRLKVKLAEAFGFCWGVERSVAMAYETRKHYPNERIWITNEIIHNPSVNDHLRKMNVLFISEEKGVKDFSVVKDGDVVILPAFGATVQDMKLLHDR 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROMP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispH PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.938e-40
Identity = 74/147 (50.34%), Postives = 102/147 (69.39%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + FR +L  SD YNRRGF    +  + + + Y SD+I  ++ N F Y  G + +KLA+++GFCWGVERAV +AYE R+ +P+E IWITNEIIHNP+VN  L +M V+ I  + G K F +V+ GDVV+LPAFGA V+EM  L+ +
Sbjct:    2 DTQAFRRSLHHSDRYNRRGFDSPTKRAQALEEAYQSDLITSIRNNSFTYKKGRLNIKLAQAFGFCWGVERAVAMAYETRRHYPDENIWITNEIIHNPSVNDHLRKMNVKFISAKNGIKDFSLVSDGDVVILPAFGATVQEMKLLHEK 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROM4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9211) GN=ispH PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.037e-39
Identity = 75/147 (51.02%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+ +  G ++VKLAE++GFCWGVERAV +AYE R+ +P+E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V +GDVV+LPAFGA V+EM  L+ R
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPTKRAQALEKAYQSNLIGSIRDNGYLFEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPKESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKNFSSVQEGDVVILPAFGATVQEMKLLHER 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.720e-39
Identity = 75/147 (51.02%), Postives = 101/147 (68.71%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D + F+ +L  SD YNRRGF    +  + + + Y S++I  +++NG+    G ++VKLAE++GFCWGVERAV +AYE R+ +P E IWITNEIIHNP+VN  L  M V+ I  E+G K F  V +GDVV+LPAFGA V EM  L+ R
Sbjct:    2 DTQAFKRSLHHSDRYNRRGFESPAKRAQALEKAYQSNLIASIRDNGYLLEHGRLRVKLAEAFGFCWGVERAVAMAYETRRHYPTESIWITNEIIHNPSVNDHLRNMNVRFISAEKGIKDFSSVEEGDVVILPAFGATVHEMKLLHER 148          
The following BLAST results are available for this feature:
BLAST of CX296370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM01.889e-4151.704-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMM9.377e-4153.064-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM99.377e-4151.024-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_TRIEI2.089e-4048.984-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM33.563e-4052.384-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMT4.654e-4053.064-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM14.654e-4053.064-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMP7.938e-4050.344-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM41.037e-3951.024-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMA6.720e-3951.024-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC05139G03SK FerrChloL1 Citrus clementina cDNA clone C05139G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296370 ID=CX296370; Name=CX296370; organism=Citrus clementina; type=EST; length=671bp
ACGAGGCTTTTGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCA
TCATGGCGACGACTCTGCAATTCTGCCGTGTTTGCGCGCGAACTGACATA
GGTTCGCGCAGTAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAG
GCCTGTGATCGTCAGGTGCTCCGGTGAAAAATCGCCGAGCTCGGCGGCGG
CTATTGGTGCCGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGA
AGTGATAATTACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGA
GCTCATGAATCAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGA
ATGGATTTGAGTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCA
TATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGC
AAGAAAACAGTTTCCTGAGGAGAAGATCTGGATTACCAATGAAATCATAC
ACAATCCAACTGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATA
CCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTAAATAAGGGTGATGT
TGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGAAATGGTGACTCTGA
ATAACAGAATGTACAGATTGT
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