CX296370

Overview
NameCX296370
Unique NameCX296370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13865 contig Ccv1_Contig13865:56..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_PROM5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=ispH PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.554e-38
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  218 DAKLFRHNLTRSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            D +  +H++  S  YNR+GF    +  + + + Y SD+I  ++EN F +  G +K+KLA+S+GFCWGVERAV +AYE R+ +P E IW+TNEIIHNP+VN  L  M V+ I  + G K F  V+ GDVV+LPAFGA V+EM  L+ +
Sbjct:    2 DTQAIKHSVQHSGRYNRKGFESPTQRAKALGESYQSDLIASIRENNFSFEKGRLKIKLAKSFGFCWGVERAVAMAYETRRHYPNEDIWMTNEIIHNPSVNNHLSRMNVKIISAKNGIKDFSSVSTGDVVILPAFGATVQEMQLLHEK 148          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_SYNY3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=ispH PE=3 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 2.023e-35
Identity = 69/119 (57.98%), Postives = 92/119 (77.31%), Query Frame = 2
Query:  302 LMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEGKKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            +MN EY S +I+++++N +    G+V + LAE++GFCWGVERAV +AYE R+ FP +++WITNEIIHNP+VN+RL EM V  I V  G+K F  V KGDVV+LPAFGA+VEEM  LN+R
Sbjct:    3 VMNTEYQSHLIQEIRQNNYRLERGDVTILLAEAFGFCWGVERAVAMAYETRQHFPGDRLWITNEIIHNPSVNQRLREMEVNFIDVVNGEKDFSGVAKGDVVILPAFGASVEEMQLLNDR 121          
BLAST of CX296370 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 63/141 (44.68%), Postives = 94/141 (66.67%), Query Frame = 2
Query:  248 RSDNYNRRGFGHKEETLELMNQEYTSDIIKKLKENGFEYTWGNVKVKLAESYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNKRLEEMAVQNIPVEEG----KKQFDVVNKGDVVVLPAFGAAVEEMVTLNNR 658
            +S NY R+GFG K E  + +  EY S +I +++ NG+    G V V+LAE++GFCWGV++AV +AYE  + F   ++WITNEIIHNP VN+ L  M ++ +  +E      K F+ V++ DVV+LPAFGA+ +EM  L+ +
Sbjct:    2 QSKNYFRKGFGLKAEVQDDLKAEYESSLIHEIRANGYTLRRGGVTVRLAEAFGFCWGVDKAVSMAYETHRMFAGRQLWITNEIIHNPLVNQHLRAMGIRFLDEDESGRRVPKDFERVSEKDVVILPAFGASTQEMQILDEK 142          
The following BLAST results are available for this feature:
BLAST of CX296370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM52.554e-3848.304-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNY32.023e-3557.984-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_GLOVI1.149e-3044.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionC05139G03SK FerrChloL1 Citrus clementina cDNA clone C05139G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296370 ID=CX296370; Name=CX296370; organism=Citrus clementina; type=EST; length=671bp
ACGAGGCTTTTGCGCCGTCTCTTTCTCGCTGAATCCGTGAATCTCCCTCA
TCATGGCGACGACTCTGCAATTCTGCCGTGTTTGCGCGCGAACTGACATA
GGTTCGCGCAGTAATAATCGCTCCGGAGCGCTGGCTCCGCCGCGCCGGAG
GCCTGTGATCGTCAGGTGCTCCGGTGAAAAATCGCCGAGCTCGGCGGCGG
CTATTGGTGCCGAATTTGACGCGAAACTGTTTCGGCATAACTTGACGAGA
AGTGATAATTACAATCGGAGAGGATTTGGCCACAAGGAAGAGACTTTGGA
GCTCATGAATCAGGAGTACACAAGTGATATTATAAAGAAATTGAAGGAGA
ATGGATTTGAGTATACTTGGGGAAATGTTAAGGTGAAGCTGGCCGAATCA
TATGGCTTTTGCTGGGGAGTTGAGCGTGCTGTGCAGATTGCTTATGAAGC
AAGAAAACAGTTTCCTGAGGAGAAGATCTGGATTACCAATGAAATCATAC
ACAATCCAACTGTTAATAAGCGGTTGGAGGAGATGGCAGTTCAAAATATA
CCTGTTGAGGAAGGAAAGAAGCAATTTGATGTGGTAAATAAGGGTGATGT
TGTGGTTTTGCCTGCATTTGGGGCTGCAGTTGAAGAAATGGTGACTCTGA
ATAACAGAATGTACAGATTGT
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