CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK122_ARATH (50S ribosomal protein L12-2, chloroplastic OS=Arabidopsis thaliana GN=RPL12B PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 7.541e-21
Identity = 49/71 (69.01%), Postives = 62/71 (87.32%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSVV 268
            +T FDVVI++VP   RIAVI A+RA+T+L+L E+K+LIEG PKKFKEGV+KD+AE+ K QLEEAGAKVS+V
Sbjct:  123 QTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKTQLEEAGAKVSIV 193          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CYAP7 (50S ribosomal protein L7/L12 OS=Cyanothece sp. (strain PCC 7424) GN=rplL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.194e-20
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV+++EVP++ +IA++K VR +T L LKEAKDL+E  PK  KEG +KDDAE+ KK+LEEAGAKV+V
Sbjct:   61 KTEFDVILEEVPADKKIAILKVVRTITGLGLKEAKDLVESTPKPIKEGTNKDDAEETKKKLEEAGAKVTV 130          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CYAA5 (50S ribosomal protein L7/L12 OS=Cyanothece sp. (strain ATCC 51142) GN=rplL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.742e-20
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV+++EVP + +IA++K VR +T L LKEAKD++E  PK  KEG  K+DAED KK+LEEAGAKVSV
Sbjct:   63 KTEFDVILEEVPGDKKIAILKVVRGITGLGLKEAKDMVESTPKPIKEGTGKEDAEDIKKKLEEAGAKVSV 132          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ACAM1 (50S ribosomal protein L7/L12 OS=Acaryochloris marina (strain MBIC 11017) GN=rplL PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.888e-20
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV++EVPS+ +IAV+K VR LT L LKEAK+++E  PK  KEGVSK+DAE+AKK LE+AG K S+
Sbjct:   59 KTEFDVVLEEVPSDKKIAVLKVVRTLTGLGLKEAKEMVESTPKSIKEGVSKEDAEEAKKSLEDAGGKASL 128          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CYAP8 (50S ribosomal protein L7/L12 OS=Cyanothece sp. (strain PCC 8801) GN=rplL PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.384e-20
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+++VP++ +IA++K VRA+T L LKEAKDL+E  PK  KE  +KDDAE  KKQLEEAGAK SV
Sbjct:   62 KTEFDVVLEDVPADKKIAILKVVRAITGLGLKEAKDLVESAPKPIKEATNKDDAESIKKQLEEAGAKASV 131          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_PORPU (50S ribosomal protein L12, chloroplastic OS=Porphyra purpurea GN=rpl12 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.089e-19
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV++EVP+  +IAV+K VR+LT L LKEAKDL+E  PK  KEG SKDDAE  KKQLE+AGA V V
Sbjct:   59 KTEFDVVLEEVPAPKKIAVLKVVRSLTGLGLKEAKDLVESAPKTLKEGASKDDAEAMKKQLEDAGATVGV 128          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_THEEB (50S ribosomal protein L7/L12 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.857e-19
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KT FDV+++EVP++ +IAV+K VR+LT L LKEAK+++E  PK  KEG SK+DAE AKK+LEEAGAKVS+
Sbjct:   62 KTAFDVILEEVPADKKIAVLKVVRSLTGLGLKEAKEVVESTPKPVKEGASKEDAEAAKKELEEAGAKVSI 131          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CYAP4 (50S ribosomal protein L7/L12 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplL PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.426e-19
Identity = 45/70 (64.29%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KT FDVV+D+VP++ +IAV+K VR LT L LKEAK+++E  PK  KEG+SK+DAE AKKQLE+AG KVS+
Sbjct:   61 KTAFDVVLDDVPADKKIAVLKIVRELTGLGLKEAKEVVESTPKPIKEGISKEDAEAAKKQLEDAGGKVSI 130          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_ODOSI (50S ribosomal protein L12, chloroplastic OS=Odontella sinensis GN=rpl12 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.426e-19
Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++DEVP++ +IAV+K VR+LT L LKEAK+L+E  PK+ +EGV+KD AE+AKKQ+E+AG K S+
Sbjct:   57 KTEFDVMLDEVPADKKIAVLKVVRSLTGLGLKEAKELVESAPKQIQEGVAKDAAEEAKKQIEDAGGKASL 126          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_CHAVU (50S ribosomal protein L12, chloroplastic OS=Chara vulgaris GN=rpl12 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.426e-19
Identity = 43/70 (61.43%), Postives = 59/70 (84.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFD++++EVPS++RI VIK +R++TN  LKEAK+ IE LPK  KEG+SK++AE  K QLEE+GAKV++
Sbjct:   65 KTEFDIILEEVPSSSRITVIKVIRSITNSGLKEAKEFIEALPKTVKEGISKEEAESVKAQLEESGAKVTL 134          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK122_ARATH7.541e-2169.0150S ribosomal protein L12-2, chloroplastic OS=Arab... [more]
RL7_CYAP72.194e-2064.2950S ribosomal protein L7/L12 OS=Cyanothece sp. (st... [more]
RL7_CYAA53.742e-2064.2950S ribosomal protein L7/L12 OS=Cyanothece sp. (st... [more]
RL7_ACAM14.888e-2065.7150S ribosomal protein L7/L12 OS=Acaryochloris mari... [more]
RL7_CYAP86.384e-2065.7150S ribosomal protein L7/L12 OS=Cyanothece sp. (st... [more]
RK12_PORPU1.089e-1968.5750S ribosomal protein L12, chloroplastic OS=Porphy... [more]
RL7_THEEB1.857e-1964.2950S ribosomal protein L7/L12 OS=Thermosynechococcu... [more]
RL7_CYAP42.426e-1964.2950S ribosomal protein L7/L12 OS=Cyanothece sp. (st... [more]
RK12_ODOSI2.426e-1962.8650S ribosomal protein L12, chloroplastic OS=Odonte... [more]
RK12_CHAVU2.426e-1961.4350S ribosomal protein L12, chloroplastic OS=Chara ... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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