CX296410
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_TOBAC (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum GN=RPL12 PE=1 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29 Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 KTEFDVVIDEVPSNARIA IKAVRALT+LALKEAK+LIEGLPKKFKEGVSKD+AEDAKKQLEEAGAKVS+ Sbjct: 116 KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_NICSY (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 5.760e-29 Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 KTEFDVVIDEVPSNARIA IKAVRALT+LALKEAK+LIEGLPKKFKEGVSKD+AEDAKKQLEEAGAKVS+ Sbjct: 116 KTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKVSI 185
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_SPIOL (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea GN=RPL12 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 8.318e-28 Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSVV 268 KTEFDV IDEVPSNARI+VIKAVRALT+L LKEAK+LIEGLPKK KEGVSKDDAEDAKKQLE+AGAKVS+V Sbjct: 119 KTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKKQLEDAGAKVSIV 189
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_ORYSJ (50S ribosomal protein L12, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL12-2 PE=2 SV=2) HSP 1 Score: 120.553 bits (301), Expect = 5.391e-27 Identity = 62/70 (88.57%), Postives = 66/70 (94.29%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 KTEFDVVI+EVPS+ARIA IK VRALTNLALKEAKDLIEGLPKK KEGVSKD+AEDAKKQLEE GAKVS+ Sbjct: 115 KTEFDVVIEEVPSSARIASIKVVRALTNLALKEAKDLIEGLPKKVKEGVSKDEAEDAKKQLEEVGAKVSI 184
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK123_ARATH (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=2) HSP 1 Score: 116.701 bits (291), Expect = 7.785e-26 Identity = 58/70 (82.86%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 +TEFDVVI+EVPS++RIAVIKAVRALT+LALKEAK+LIEGLPKKFKEG++KD+AE+AKK LEEAGAKVS+ Sbjct: 117 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 186
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK121_ARATH (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana GN=RPL12A PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 7.785e-26 Identity = 58/70 (82.86%), Postives = 69/70 (98.57%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 +TEFDVVI+EVPS++RIAVIKAVRALT+LALKEAK+LIEGLPKKFKEG++KD+AE+AKK LEEAGAKVS+ Sbjct: 121 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLEEAGAKVSI 190
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK122_SECCE (50S ribosomal protein L12-2, chloroplastic OS=Secale cereale GN=RPL12-2 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25 Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 +TEFDVVI+EVPS+ARIA IK VRALTNLALKEAKDLIEGLPKK KE VSKD+AE+AKKQLE GAKVS+ Sbjct: 104 QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEAKKQLEGVGAKVSI 173
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK121_SECCE (50S ribosomal protein L12-1, chloroplastic OS=Secale cereale GN=RPL12-1 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25 Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 +TEFDVVI+EVPS+ARIA IK VRALTNLALKEAKDLIEGLPKK KE VSKD+AE+AKKQLE GAKVS+ Sbjct: 104 QTEFDVVIEEVPSSARIATIKIVRALTNLALKEAKDLIEGLPKKLKEAVSKDEAEEAKKQLEGVGAKVSI 173
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNP6 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplL PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.820e-22 Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 KTEFDVV++EVP++ +IAV+K VR +T L LKEAKDL+E PK KEGVSKDDAE AKK+LEEAGAKVSV Sbjct: 58 KTEFDVVLEEVPADKKIAVLKVVRGITGLGLKEAKDLVEAAPKPIKEGVSKDDAEAAKKELEEAGAKVSV 127
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNE7 (50S ribosomal protein L7/L12 OS=Synechococcus elongatus (strain PCC 7942) GN=rplL PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.820e-22 Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 2 Query: 56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265 KTEFDVV++EVP++ +IAV+K VR +T L LKEAKDL+E PK KEGVSKDDAE AKK+LEEAGAKVSV Sbjct: 58 KTEFDVVLEEVPADKKIAVLKVVRGITGLGLKEAKDLVEAAPKPIKEGVSKDDAEAAKKELEEAGAKVSV 127 The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bpback to top |