CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOUT (50S ribosomal protein L7/L12 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOSM (50S ribosomal protein L7/L12 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOSE (50S ribosomal protein L7/L12 OS=Escherichia coli (strain SE11) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOLU (50S ribosomal protein L7/L12 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOLI (50S ribosomal protein L7/L12 OS=Escherichia coli (strain K12) GN=rplL PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOLC (50S ribosomal protein L7/L12 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOL6 (50S ribosomal protein L7/L12 OS=Escherichia coli O6 GN=rplL PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOL5 (50S ribosomal protein L7/L12 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOHS (50S ribosomal protein L7/L12 OS=Escherichia coli O9:H4 (strain HS) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECODH (50S ribosomal protein L7/L12 OS=Escherichia coli (strain K12 / DH10B) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_ECOUT3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli (... [more]
RL7_ECOSM3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli (... [more]
RL7_ECOSE3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli (... [more]
RL7_ECOLU3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECOLI3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli (... [more]
RL7_ECOLC3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli (... [more]
RL7_ECOL63.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECOL53.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECOHS3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECODH3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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