CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECOBW (50S ribosomal protein L7/L12 OS=Escherichia coli (strain K12 / BW2952) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO8A (50S ribosomal protein L7/L12 OS=Escherichia coli O8 (strain IAI1) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO81 (50S ribosomal protein L7/L12 OS=Escherichia coli O81 (strain ED1a) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO7I (50S ribosomal protein L7/L12 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO5E (50S ribosomal protein L7/L12 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO57 (50S ribosomal protein L7/L12 OS=Escherichia coli O157:H7 GN=rplL PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO55 (50S ribosomal protein L7/L12 OS=Escherichia coli (strain 55989 / EAEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO45 (50S ribosomal protein L7/L12 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO27 (50S ribosomal protein L7/L12 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ECO24 (50S ribosomal protein L7/L12 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_ECOBW3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli (... [more]
RL7_ECO8A3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECO813.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECO7I3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECO5E3.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECO573.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECO553.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli (... [more]
RL7_ECO453.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECO273.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]
RL7_ECO243.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia coli O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
back to top