CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GEOSM (50S ribosomal protein L7/L12 OS=Geobacter sp. (strain M21) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N +IAVIK VRALT+L LKEAKDL++G P+  K G+SK++A DA+KQL EAGA+V V
Sbjct:   57 KTEFDVILKSAGAN-KIAVIKVVRALTSLGLKEAKDLVDGAPQPVKTGISKEEAADAQKQLVEAGAEVEV 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_DESDA (50S ribosomal protein L7/L12 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ E  +N +I VIK VRALT+L LKEAK+ ++G P   KE VSK++AEDAKKQL EAGA V V
Sbjct:   59 KTEFDVILKEAGAN-KIGVIKVVRALTSLGLKEAKEKVDGCPSTLKEAVSKEEAEDAKKQLTEAGAVVEV 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ACTPJ (50S ribosomal protein L7/L12 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ E  +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SK +AE  KK+LEEAGAKV +
Sbjct:   53 KTEFDVILAEAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKPEAEALKKELEEAGAKVEI 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ACTP7 (50S ribosomal protein L7/L12 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ E  +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SK +AE  KK+LEEAGAKV +
Sbjct:   53 KTEFDVILAEAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKPEAEALKKELEEAGAKVEI 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ACTP2 (50S ribosomal protein L7/L12 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ E  +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SK +AE  KK+LEEAGAKV +
Sbjct:   53 KTEFDVILAEAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKPEAEALKKELEEAGAKVEI 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNJA (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +T FDV+++ VP++ +IAV+K VR LT L LK+AKDL+E  PK  KEG+ K++A + KK+LEEAGA V V
Sbjct:   67 QTAFDVILEAVPADKKIAVLKVVRELTGLGLKDAKDLVEAAPKPVKEGIPKEEANEIKKKLEEAGATVKV 136          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RHISN (50S ribosomal protein L7/L12 OS=Rhizobium sp. (strain NGR234) GN=rplL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ +  +N +I VIK VRA+T L LKEAKDL+EG PK  KE VSK +A D KK+LE+AGAKV V
Sbjct:   58 KTEFDVILTDAGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEAVSKAEAADLKKKLEDAGAKVDV 126          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RHIME (50S ribosomal protein L7/L12 OS=Rhizobium meliloti GN=rplL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ +  +N +I VIK VRA+T L LKEAKDL+EG PK  KE VSK +A D KK+LE+AGAKV V
Sbjct:   57 KTEFDVILTDAGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEAVSKAEAADLKKKLEDAGAKVDV 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RHILW (50S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ E  +N +I VIK VRA+T L LKEAKDL+EG PK  KEGV+K +A D KK+LE+AGAK  V
Sbjct:   56 KTEFDVILVEAGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGVNKAEAADIKKKLEDAGAKADV 124          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_HAEIN (50S ribosomal protein L7/L12 OS=Haemophilus influenzae GN=rplL PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSK++AE  KK+LEEAGA+V V
Sbjct:   54 KTEFDVVLKSAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPANLKEGVSKEEAEALKKELEEAGAEVEV 122          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_GEOSM4.282e-1661.4350S ribosomal protein L7/L12 OS=Geobacter sp. (str... [more]
RL7_DESDA4.282e-1662.8650S ribosomal protein L7/L12 OS=Desulfovibrio desu... [more]
RL7_ACTPJ4.282e-1661.4350S ribosomal protein L7/L12 OS=Actinobacillus ple... [more]
RL7_ACTP74.282e-1661.4350S ribosomal protein L7/L12 OS=Actinobacillus ple... [more]
RL7_ACTP24.282e-1661.4350S ribosomal protein L7/L12 OS=Actinobacillus ple... [more]
RL7_SYNJA5.592e-1655.7150S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_RHISN5.592e-1662.8650S ribosomal protein L7/L12 OS=Rhizobium sp. (str... [more]
RL7_RHIME5.592e-1662.8650S ribosomal protein L7/L12 OS=Rhizobium meliloti... [more]
RL7_RHILW5.592e-1662.8650S ribosomal protein L7/L12 OS=Rhizobium legumino... [more]
RL7_HAEIN5.592e-1662.8650S ribosomal protein L7/L12 OS=Haemophilus influe... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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