CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NOSP7 (50S ribosomal protein L7/L12 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplL PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.058e-19
Identity = 43/70 (61.43%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF+V++D VP++ +IAV+K VR LT L LKEAKDL+E  PK  KEG++KD AEDAKK++EEAG KV++
Sbjct:   60 QTEFEVILDSVPADKKIAVLKIVRELTGLGLKEAKDLVEAAPKAVKEGIAKDAAEDAKKRIEEAGGKVTI 129          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_PORYE (50S ribosomal protein L12, chloroplastic OS=Porphyra yezoensis GN=rpl12 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.058e-19
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV++EVP+  +I+V+K VR LT L LKEAKDL+E  PK  KEG SKDDAE  KKQLE+AGA V V
Sbjct:   59 KTEFDVVLEEVPAPKKISVLKVVRPLTGLGLKEAKDLVESTPKVLKEGASKDDAETMKKQLEDAGATVIV 128          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_GUITH (50S ribosomal protein L12, chloroplastic OS=Guillardia theta GN=rpl12 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.218e-19
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFD+++++VP++ +IAV+K VR LT L LKEAKDL+E  PK  KEG+SK DAE  KKQLEEAGAK ++
Sbjct:   59 KTEFDLILEDVPADKKIAVLKVVRGLTGLGLKEAKDLVEAAPKPIKEGMSKADAEAGKKQLEEAGAKATL 128          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_THAPS (50S ribosomal protein L12, chloroplastic OS=Thalassiosira pseudonana GN=rpl12 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.572e-18
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF V++DEVP++ +IAV+K VR LT L LKEAK+L+E  PK  +EG+ KD AEDAKKQ+E+AG KVS+
Sbjct:   58 KTEFTVMLDEVPADKKIAVLKVVRTLTGLGLKEAKELVESTPKMVQEGLGKDAAEDAKKQIEDAGGKVSL 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_NEPOL (50S ribosomal protein L12, chloroplastic OS=Nephroselmis olivacea GN=rpl12 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.572e-18
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF V+I++VPS  RIAVIK VRALT L LKEAKD+IE +PK  KEG+ KD+A+  K+QLEEAGA V+V
Sbjct:   58 QTEFTVMINDVPSAKRIAVIKVVRALTGLGLKEAKDMIESVPKAIKEGIGKDEAQQIKQQLEEAGATVTV 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNP2 (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplL PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.054e-18
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++DEVP++ +IAV+K VR +T L LKEAK+++E  PK  KE   K+DAE  KKQLE+AGAK SV
Sbjct:   58 KTEFDVILDEVPADKKIAVLKVVRGITGLGLKEAKEMVESAPKPIKEATGKEDAEAIKKQLEDAGAKASV 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_TRIEI (50S ribosomal protein L7/L12 OS=Trichodesmium erythraeum (strain IMS101) GN=rplL PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.682e-18
Identity = 41/70 (58.57%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFD ++ E PS+ +IA++K VR++T L LKEAK+L+E +PK  KEG++K+ AED KKQLEEAGAKV +
Sbjct:   63 QTEFDAILTEFPSDKKIAILKVVRSITGLGLKEAKELVESVPKPLKEGIAKEAAEDIKKQLEEAGAKVEI 132          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ANASP (50S ribosomal protein L7/L12 OS=Anabaena sp. (strain PCC 7120) GN=rplL PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDVV++ VP++ +IAV+K VR +T L LKEAKDL+E  PK  KE ++KD AEDAKK++EEAG KV+V
Sbjct:   60 QTEFDVVLESVPADKKIAVLKIVREITGLGLKEAKDLVEAAPKAVKEAIAKDAAEDAKKRIEEAGGKVTV 129          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNY3 (50S ribosomal protein L7/L12 OS=Synechocystis sp. (strain PCC 6803) GN=rplL PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18
Identity = 42/70 (60.00%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV+++EVP++ +IAV+K VR +T L LKEAK+L+E  PK  KE   KDDAE  KKQ+EEAG K +V
Sbjct:   58 KTEFDVILEEVPADKKIAVLKVVRTITGLGLKEAKELVESTPKAIKEATGKDDAEAIKKQIEEAGGKAAV 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ANAVT (50S ribosomal protein L7/L12 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplL PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.975e-18
Identity = 41/70 (58.57%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV+++ VP++ +IAV+K VR +T L LKEAKDL+E  PK  KE ++KD AEDAKK++EEAG KV++
Sbjct:   58 QTEFDVILESVPADKKIAVLKIVREITGLGLKEAKDLVEAAPKAVKEAIAKDAAEDAKKRIEEAGGKVTI 127          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_NOSP77.058e-1961.4350S ribosomal protein L7/L12 OS=Nostoc punctiforme... [more]
RK12_PORYE7.058e-1967.1450S ribosomal protein L12, chloroplastic OS=Porphy... [more]
RK12_GUITH9.218e-1962.8650S ribosomal protein L12, chloroplastic OS=Guilla... [more]
RK12_THAPS1.572e-1862.8650S ribosomal protein L12, chloroplastic OS=Thalas... [more]
RK12_NEPOL1.572e-1865.7150S ribosomal protein L12, chloroplastic OS=Nephro... [more]
RL7_SYNP22.054e-1861.4350S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_TRIEI2.682e-1858.5750S ribosomal protein L7/L12 OS=Trichodesmium eryt... [more]
RL7_ANASP3.503e-1861.4350S ribosomal protein L7/L12 OS=Anabaena sp. (stra... [more]
RL7_SYNY35.975e-1860.0050S ribosomal protein L7/L12 OS=Synechocystis sp. ... [more]
RL7_ANAVT5.975e-1858.5750S ribosomal protein L7/L12 OS=Anabaena variabili... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
back to top