CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_LAWIP (50S ribosomal protein L7/L12 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rplL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ E  +N +IAVIK VRALT L LKEAKD ++G P   KEGVSK+DAE+AKKQL EAGA V V
Sbjct:   59 KTEFDVILKEAGAN-KIAVIKVVRALTGLGLKEAKDKVDGAPSTLKEGVSKEDAEEAKKQLTEAGATVEV 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_PHATR (50S ribosomal protein L12, chloroplastic OS=Phaeodactylum tricornutum GN=rpl12 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.331e-17
Identity = 41/70 (58.57%), Postives = 58/70 (82.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF++++DEVP++ +IAV+K VR+LT L LKEAK+L+E  PK+ +EG+ KD AE+AKKQ+E AG K S+
Sbjct:   58 KTEFNLMLDEVPADKKIAVLKVVRSLTGLGLKEAKELVESAPKQIQEGLGKDAAEEAKKQIEAAGGKASL 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GLOVI (50S ribosomal protein L7/L12 OS=Gloeobacter violaceus GN=rplL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.965e-17
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF V+++EVP++ +IA++K  R +T L LKEAKDL+E  PK  KEGV+KDDA   KK+LEEAGAK S+
Sbjct:   67 QTEFTVMLEEVPADKKIAILKVAREITGLGLKEAKDLVEAAPKAVKEGVNKDDAATIKKKLEEAGAKASI 136          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NITOC (50S ribosomal protein L7/L12 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplL PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+    SN ++ VIKAVR++T+L LKEAKDL+EG P   KEG+SKD+A++ KKQLEEAGA + V
Sbjct:   57 KTEFDVVLVSFGSN-KVQVIKAVRSITSLGLKEAKDLVEGAPSPVKEGISKDEADEIKKQLEEAGASIEV 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RALME (50S ribosomal protein L7/L12 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF+V++ EV SN ++ VIKAVR +T L LKEAKDL++G PK  KEGV K  A+DAKK+LE+AGAKV V
Sbjct:   55 KTEFNVILAEVGSN-KVGVIKAVREITGLGLKEAKDLVDGAPKPVKEGVDKATADDAKKKLEDAGAKVDV 123          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ERWCT (50S ribosomal protein L7/L12 OS=Erwinia carotovora subsp. atroseptica GN=rplL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+  + +N ++AVIKAVR+ T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVVLKAIGAN-KVAVIKAVRSATGLGLKEAKDLVESAPAVMKEGVSKDDAESLKKSLEEAGAEVEV 120          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BURVG (50S ribosomal protein L7/L12 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rplL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+ E  SN ++AVIKAVR LT L LKEAKD+++G PK  KEGV K  AE+AKK+LEEAGAKV V
Sbjct:   54 KTEFTVVLTEAGSN-KVAVIKAVRELTGLGLKEAKDVVDGAPKAVKEGVDKAAAEEAKKKLEEAGAKVEV 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_EUGGR (50S ribosomal protein L12, chloroplastic OS=Euglena gracilis GN=rpl12 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV+I EVPS  RI VIK VR+LT L LKEAKDLIE +PK   E VSK+ AE+ KK LEEAGA + +
Sbjct:   61 KTEFDVIIQEVPSAKRINVIKTVRSLTTLGLKEAKDLIESVPKVVCEAVSKEVAEETKKLLEEAGASIII 130          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_CHLVU (50S ribosomal protein L12, chloroplastic OS=Chlorella vulgaris GN=rpl12 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.058e-17
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KT FDV+I++V S+ R+ V+K VR LT+L LKEAK+ I  LPK  ++GVSKDDAE +KKQLE+AGAKV +
Sbjct:   61 KTTFDVIIEDVASDKRVPVLKVVRNLTSLDLKEAKEAITSLPKVIQQGVSKDDAEASKKQLEDAGAKVKI 130          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GEOMG (50S ribosomal protein L7/L12 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplL PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFD+++    +N +I VIK VRALT L LKEAKDL++G PK  K GVSK++AEDAKKQL E+GA+V +
Sbjct:   58 KTEFDIILKSAGAN-KIGVIKVVRALTGLGLKEAKDLVDGAPKSVKTGVSKEEAEDAKKQLVESGAEVEI 126          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_LAWIP1.019e-1767.1450S ribosomal protein L7/L12 OS=Lawsonia intracell... [more]
RK12_PHATR1.331e-1758.5750S ribosomal protein L12, chloroplastic OS=Phaeod... [more]
RL7_GLOVI2.965e-1758.5750S ribosomal protein L7/L12 OS=Gloeobacter violac... [more]
RL7_NITOC3.873e-1762.8650S ribosomal protein L7/L12 OS=Nitrosococcus ocea... [more]
RL7_RALME5.058e-1764.2950S ribosomal protein L7/L12 OS=Ralstonia metallid... [more]
RL7_ERWCT5.058e-1765.7150S ribosomal protein L7/L12 OS=Erwinia carotovora... [more]
RL7_BURVG5.058e-1767.1450S ribosomal protein L7/L12 OS=Burkholderia vietn... [more]
RK12_EUGGR5.058e-1765.7150S ribosomal protein L12, chloroplastic OS=Euglen... [more]
RK12_CHLVU5.058e-1761.4350S ribosomal protein L12, chloroplastic OS=Chlore... [more]
RL7_GEOMG8.628e-1761.4350S ribosomal protein L7/L12 OS=Geobacter metallir... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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