CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7595 contig Ccv1_Contig7595:374..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_GRATL (50S ribosomal protein L12, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl12 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.628e-17
Identity = 38/70 (54.29%), Postives = 57/70 (81.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFD++++EVP+  +IA++K VR++T L LKEAK L+E  PK  K+  +K+++E+ K+QLEEAGAKVS+
Sbjct:   61 KTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKMIKDNTNKENSEEIKQQLEEAGAKVSI 130          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_HYDS0 (50S ribosomal protein L7/L12 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.127e-16
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ +  +N ++ VIK VR LT L LKEAKDL++G PK  K+GVSK++AE+ KK+LEEAGAKV V
Sbjct:   58 KTEFDVILQDAGAN-KLNVIKVVRELTGLGLKEAKDLVDGAPKPIKQGVSKEEAENIKKKLEEAGAKVEV 126          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BURCJ (50S ribosomal protein L7/L12 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rplL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.127e-16
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+ E  +N +++VIKAVR LT L LKEAKDL++G PK  KEGV K  AE+AKK+LEEAGAKV V
Sbjct:   55 KTEFTVVLAEAGAN-KVSVIKAVRELTGLGLKEAKDLVDGAPKPIKEGVDKAAAEEAKKKLEEAGAKVEV 123          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNJB (50S ribosomal protein L7/L12 OS=Synechococcus sp. GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +T FDV+++ VP++ +IA++K VR LT L LK+AKDL+E  PK  KEGV+K++A D KK+LEEAGA V +
Sbjct:   66 QTAFDVILEAVPADKKIAILKVVRELTGLGLKDAKDLVEAAPKPVKEGVAKEEANDIKKKLEEAGATVKI 135          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SODGM (50S ribosomal protein L7/L12 OS=Sodalis glossinidius (strain morsitans) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+  + +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LE+AGA V V
Sbjct:   53 KTEFDVVLSAIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPATLKEGVSKDDAETLKKDLEQAGASVEV 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PECCP (50S ribosomal protein L7/L12 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+  + +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVVLKGIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAVLKEGVSKDDAEALKKSLEEAGAEVEV 120          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NEISI (50S ribosomal protein L7/L12 OS=Neisseria sicca GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+     + ++ VIK VRA+T L LKEAKD+++G PK  KEGVSK +AED +KQLEEAGAKV +
Sbjct:   53 KTEFDVVLASA-GDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGAKVEI 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NEIPE (50S ribosomal protein L7/L12 OS=Neisseria perflava GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+     + ++ VIK VRA+T L LKEAKD+++G PK  KEGVSK +AED +KQLEEAGAKV +
Sbjct:   54 KTEFDVVLASA-GDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTLKEGVSKAEAEDIQKQLEEAGAKVEI 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NEIMF (50S ribosomal protein L7/L12 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+     + ++ VIK VRA+T L LKEAKD+++G PK  KEGVSK +AED +KQLEEAGAKV +
Sbjct:   54 KTEFDVVLASA-GDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGAKVEI 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NEIMB (50S ribosomal protein L7/L12 OS=Neisseria meningitidis serogroup B GN=rplL PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+     + ++ VIK VRA+T L LKEAKD+++G PK  KEGVSK +AED +KQLEEAGAKV +
Sbjct:   54 KTEFDVVLASA-GDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGAKVEI 122          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK12_GRATL8.628e-1754.2950S ribosomal protein L12, chloroplastic OS=Gracil... [more]
RL7_HYDS01.127e-1661.4350S ribosomal protein L7/L12 OS=Hydrogenobaculum s... [more]
RL7_BURCJ1.127e-1665.7150S ribosomal protein L7/L12 OS=Burkholderia cepac... [more]
RL7_SYNJB1.472e-1655.7150S ribosomal protein L7/L12 OS=Synechococcus sp. ... [more]
RL7_SODGM1.472e-1664.2950S ribosomal protein L7/L12 OS=Sodalis glossinidi... [more]
RL7_PECCP1.472e-1665.7150S ribosomal protein L7/L12 OS=Pectobacterium car... [more]
RL7_NEISI1.472e-1661.4350S ribosomal protein L7/L12 OS=Neisseria sicca GN... [more]
RL7_NEIPE1.472e-1661.4350S ribosomal protein L7/L12 OS=Neisseria perflava... [more]
RL7_NEIMF1.472e-1661.4350S ribosomal protein L7/L12 OS=Neisseria meningit... [more]
RL7_NEIMB1.472e-1661.4350S ribosomal protein L7/L12 OS=Neisseria meningit... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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