CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PELLD (50S ribosomal protein L7/L12 OS=Pelodictyon luteolum (strain DSM 273) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDVV+      ++I VIK VRA+T L LKEAKD+++G PK  KE VSKD+AE   K+L++AGA V +
Sbjct:   54 QTEFDVVLTAA-GESKINVIKVVRAITGLGLKEAKDMVDGAPKTVKEAVSKDEAEKLMKELKDAGASVEL 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_DESAA (50S ribosomal protein L7/L12 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++     + +I VIK VRA+T L LKEAK L+E  PK  KEG++K+DAE  K+QLE AGA+V +
Sbjct:   57 KTEFDVILLSA-GDKKIQVIKEVRAITGLGLKEAKALVEEAPKAVKEGIAKEDAEKVKEQLEGAGAQVDI 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_DECAR (50S ribosomal protein L7/L12 OS=Dechloromonas aromatica (strain RCB) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 41/70 (58.57%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF V++     + ++ VIK VRA T L LKEAKDL++G PK  KEGVSK DAE  K QLE AGAKV V
Sbjct:   54 QTEFTVMLTGA-GDKKVEVIKVVRAATGLGLKEAKDLVDGAPKAVKEGVSKADAEALKAQLEAAGAKVEV 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOBL (50S ribosomal protein L7/L12 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  S  +I VIKAVR +T L LKEAK L++G PK  KE  SK+D E  K +LEE GAKV +
Sbjct:   53 KTEFDVVLTDAGSE-KIKVIKAVREVTGLGLKEAKALVDGAPKTLKEAASKEDGEAIKAKLEEVGAKVEL 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOAB (50S ribosomal protein L7/L12 OS=Clostridium acetobutylicum GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ E  +  ++ VIK VR LT L LK+AK L++G PK  KEGV+K++AE  K ++EEAG KV +
Sbjct:   54 KTEFDVVLAEAGAK-KLQVIKVVRELTGLGLKDAKALVDGAPKTIKEGVAKEEAESMKAKIEEAGGKVEL 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BUCAP (50S ribosomal protein L7/L12 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rplL PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFD+ +  +  N +++VIK+VR+ T L LKEAKDL+E  P   KE +SK+DAE  KK LE+AGA++ +
Sbjct:   53 KTEFDIFLKSIGPN-KVSVIKSVRSATGLGLKEAKDLVESAPTVLKENMSKNDAESLKKTLEDAGAEIEI 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BACHD (50S ribosomal protein L7/L12 OS=Bacillus halodurans GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV++     ++I VIK VR +T L LKEAK L++G P   KEGV+K++AE+ K +LEEAGA V +
Sbjct:   52 KTEFDVVLESA-GGSKINVIKVVREITGLGLKEAKALVDGAPAPIKEGVAKEEAEEMKAKLEEAGASVEL 120          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_AZOVD (50S ribosomal protein L7/L12 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.393e-13
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF VV+ E   + ++ VIK VR LT L LKEAK +++G P   KEG+SKD+AE AKK LEEAGAKV +
Sbjct:   53 QTEFTVVLAEA-GDKKVNVIKVVRELTGLGLKEAKAVVDGAPGVVKEGISKDEAEAAKKALEEAGAKVEL 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RALSO (50S ribosomal protein L7/L12 OS=Ralstonia solanacearum GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++ VIKAVR +T L LKEAKDL++G PK  KE + K DA+ A K+L EAGA+V V
Sbjct:   55 KTEFDVILKGAGAN-KVGVIKAVREITGLGLKEAKDLVDGAPKTVKEAMPKADADAAAKKLIEAGAEVEV 123          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_LACH4 (50S ribosomal protein L7/L12 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K+EFDV + E     ++ VIKAVR +T L LK++KDL++G PK  KEGVS+D+A D K +LEE GA V++
Sbjct:   51 KSEFDVELTEA-GQEKVKVIKAVRDITGLGLKDSKDLVDGAPKNVKEGVSEDEANDIKAKLEEVGATVTL 119          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_PELLD3.393e-1354.2950S ribosomal protein L7/L12 OS=Pelodictyon luteol... [more]
RL7_DESAA3.393e-1355.7150S ribosomal protein L7/L12 OS=Desulfatibacillum ... [more]
RL7_DECAR3.393e-1358.5750S ribosomal protein L7/L12 OS=Dechloromonas arom... [more]
RL7_CLOBL3.393e-1357.1450S ribosomal protein L7/L12 OS=Clostridium botuli... [more]
RL7_CLOAB3.393e-1354.2950S ribosomal protein L7/L12 OS=Clostridium acetob... [more]
RL7_BUCAP3.393e-1351.4350S ribosomal protein L7/L12 OS=Buchnera aphidicol... [more]
RL7_BACHD3.393e-1354.2950S ribosomal protein L7/L12 OS=Bacillus haloduran... [more]
RL7_AZOVD3.393e-1357.1450S ribosomal protein L7/L12 OS=Azotobacter vinela... [more]
RL7_RALSO4.431e-1355.7150S ribosomal protein L7/L12 OS=Ralstonia solanace... [more]
RL7_LACH44.431e-1352.8650S ribosomal protein L7/L12 OS=Lactobacillus helv... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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