CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GRAFK (50S ribosomal protein L7/L12 OS=Gramella forsetii (strain KT0803) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++   P  +++AV+K V+ LT L LK+AK L++  PK  KEGV+KD+AE  K QLEEAGA+V +
Sbjct:   55 QTEFDVILT-APGGSKLAVVKLVKELTGLGLKDAKALVDEAPKPVKEGVAKDEAEALKAQLEEAGAEVEL 123          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GRABC (50S ribosomal protein L7/L12 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF V++ +   + +I VIK +R +T L LKEAKDL+EG PK  KEGV+KD+AE  KK LEE GA V +
Sbjct:   56 QTEFTVILAKA-GDKKINVIKEIRTITGLGLKEAKDLVEGAPKTVKEGVNKDEAEKIKKVLEEQGAAVEI 124          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_COREF (50S ribosomal protein L7/L12 OS=Corynebacterium efficiens GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTN-LALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDVV+++  +  +I VIK VR L + L LKEAK+L+EG PK   EG +KDDAE AK +LEEAGAKV++
Sbjct:   58 KDEFDVVLEDAGAK-KIGVIKVVRELVSGLGLKEAKELVEGAPKAILEGANKDDAEAAKAKLEEAGAKVTL 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOPH (50S ribosomal protein L7/L12 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV + +V +N ++ VIK VR +T L LKEAKD+++G PK  KE  SK++A+D K +LE  GAKV++
Sbjct:   51 KTEFDVELTDVGAN-KVKVIKVVREVTGLGLKEAKDVVDGAPKVLKEAASKEEADDIKAKLEAEGAKVTL 119          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOBM (50S ribosomal protein L7/L12 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  S  +I VIKAVR +T L LKEAK L++G PK  KE  SK+D E  K +LEE GAKV +
Sbjct:   53 KTEFDVVLADAGSE-KIKVIKAVREVTGLGLKEAKALVDGAPKTLKEAASKEDGEAIKAKLEEVGAKVEL 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOBK (50S ribosomal protein L7/L12 OS=Clostridium botulinum (strain Okra / Type B1) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  S  +I VIKAVR +T L LKEAK L++G PK  KE  SK+D E  K +LEE GAKV +
Sbjct:   54 KTEFDVVLADAGSE-KIKVIKAVREVTGLGLKEAKALVDGAPKTLKEAASKEDGEAIKAKLEEVGAKVEL 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOBJ (50S ribosomal protein L7/L12 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  S  +I VIKAVR +T L LKEAK L++G PK  KE  SK+D E  K +LEE GAKV +
Sbjct:   54 KTEFDVVLADAGSE-KIKVIKAVREVTGLGLKEAKALVDGAPKTLKEAASKEDGEAIKAKLEEVGAKVEL 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOBH (50S ribosomal protein L7/L12 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  S  +I VIKAVR +T L LKEAK L++G PK  KE  SK+D E  K +LEE GAKV +
Sbjct:   54 KTEFDVVLADAGSE-KIKVIKAVREVTGLGLKEAKALVDGAPKTLKEAASKEDGEAIKAKLEEVGAKVEL 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOB6 (50S ribosomal protein L7/L12 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  S  +I VIKAVR +T L LKEAK L++G PK  KE  SK+D E  K +LEE GAKV +
Sbjct:   53 KTEFDVVLADAGSE-KIKVIKAVREVTGLGLKEAKALVDGAPKTLKEAASKEDGEAIKAKLEEVGAKVEL 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLOB1 (50S ribosomal protein L7/L12 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  S  +I VIKAVR +T L LKEAK L++G PK  KE  SK+D E  K +LEE GAKV +
Sbjct:   54 KTEFDVVLADAGSE-KIKVIKAVREVTGLGLKEAKALVDGAPKTLKEAASKEDGEAIKAKLEEVGAKVEL 122          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_GRAFK4.431e-1352.8650S ribosomal protein L7/L12 OS=Gramella forsetii ... [more]
RL7_GRABC4.431e-1354.2950S ribosomal protein L7/L12 OS=Granulibacter beth... [more]
RL7_COREF4.431e-1357.7550S ribosomal protein L7/L12 OS=Corynebacterium ef... [more]
RL7_CLOPH4.431e-1352.8650S ribosomal protein L7/L12 OS=Clostridium phytof... [more]
RL7_CLOBM4.431e-1357.1450S ribosomal protein L7/L12 OS=Clostridium botuli... [more]
RL7_CLOBK4.431e-1357.1450S ribosomal protein L7/L12 OS=Clostridium botuli... [more]
RL7_CLOBJ4.431e-1357.1450S ribosomal protein L7/L12 OS=Clostridium botuli... [more]
RL7_CLOBH4.431e-1357.1450S ribosomal protein L7/L12 OS=Clostridium botuli... [more]
RL7_CLOB64.431e-1357.1450S ribosomal protein L7/L12 OS=Clostridium botuli... [more]
RL7_CLOB14.431e-1357.1450S ribosomal protein L7/L12 OS=Clostridium botuli... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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