CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CHLP8 (50S ribosomal protein L7/L12 OS=Chlorobaculum parvum (strain NCIB 8327) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+    +  +I VIK VRA+T L LKEAK++++G PK  KE VSKD+AE   K+L++AGA+V +
Sbjct:   57 KTEFDVVLKAAGAQ-KINVIKVVRAITGLGLKEAKEMVDGAPKTVKEAVSKDEAEKIAKELKDAGAEVEL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BACSK (50S ribosomal protein L7/L12 OS=Bacillus clausii (strain KSM-K16) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDVV++   S+ +I VIK VR +T L LKEAK L++G P   KEGV+K++AE+ K +LEEAGA V +
Sbjct:   51 QTEFDVVLESAGSS-KIGVIKVVREITGLGLKEAKALVDGAPAPIKEGVAKEEAEEIKGKLEEAGASVEL 119          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ACIF5 (50S ribosomal protein L7/L12 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++    +N ++  IK VRA+T L LKEAKDL++G PK  KEGV+K +AE  K QL EAGA+  +
Sbjct:   59 QTEFDVILTAAGAN-KVNTIKVVRAITGLGLKEAKDLVDGAPKPVKEGVAKAEAESVKAQLVEAGAEAEI 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ACIF2 (50S ribosomal protein L7/L12 OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=rplL PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++    +N ++  IK VRA+T L LKEAKDL++G PK  KEGV+K +AE  K QL EAGA+  +
Sbjct:   59 QTEFDVILTAAGAN-KVNTIKVVRAITGLGLKEAKDLVDGAPKPVKEGVAKAEAESVKAQLVEAGAEAEI 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_VIBCM (50S ribosomal protein L7/L12 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF+V++    +N ++AVIKAVR  T L LKEAK L++G P   KE VSK++AE  KK+LEEAGA V V
Sbjct:   52 QTEFNVILAAAGAN-KVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKEEAEALKKELEEAGATVEV 120          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_VIBCH (50S ribosomal protein L7/L12 OS=Vibrio cholerae GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF+V++    +N ++AVIKAVR  T L LKEAK L++G P   KE VSK++AE  KK+LEEAGA V V
Sbjct:   52 QTEFNVILAAAGAN-KVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKEEAEALKKELEEAGATVEV 120          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_VIBC3 (50S ribosomal protein L7/L12 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF+V++    +N ++AVIKAVR  T L LKEAK L++G P   KE VSK++AE  KK+LEEAGA V V
Sbjct:   52 QTEFNVILAAAGAN-KVAVIKAVRGATGLGLKEAKALVDGAPASVKEAVSKEEAEALKKELEEAGATVEV 120          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SHELP (50S ribosomal protein L7/L12 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+     N ++AVIKA+R  T L LKEAK + E  P   KEG+SK++AE  KK+LEEAGA+V +
Sbjct:   53 KTEFDVVMTSHGDN-KVAVIKALRGATGLGLKEAKGMAESAPVAVKEGISKEEAEALKKELEEAGAQVEI 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GLUDA (50S ribosomal protein L7/L12 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF VV+ +   + +I VIK +R +T L LKEAKDL+EG PK  KEGV+KD+AE  KK LE+ GA V V
Sbjct:   56 QTEFTVVLAKA-GDKKINVIKEIRGITGLGLKEAKDLVEGAPKTVKEGVNKDEAEKIKKLLEDNGASVEV 124          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_FLAJ1 (50S ribosomal protein L7/L12 OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF VV+ +  ++ ++AV+K V+ LT L LKEAKD+++G P   KEGVSK++AE  KK LEEAGA V +
Sbjct:   54 QTEFTVVLKDAGAS-KLAVVKLVKELTGLGLKEAKDVVDGAPSNVKEGVSKEEAEGLKKSLEEAGATVEL 122          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_CHLP84.431e-1354.2950S ribosomal protein L7/L12 OS=Chlorobaculum parv... [more]
RL7_BACSK4.431e-1354.2950S ribosomal protein L7/L12 OS=Bacillus clausii (... [more]
RL7_ACIF54.431e-1352.8650S ribosomal protein L7/L12 OS=Acidithiobacillus ... [more]
RL7_ACIF24.431e-1352.8650S ribosomal protein L7/L12 OS=Acidithiobacillus ... [more]
RL7_VIBCM5.787e-1355.7150S ribosomal protein L7/L12 OS=Vibrio cholerae se... [more]
RL7_VIBCH5.787e-1355.7150S ribosomal protein L7/L12 OS=Vibrio cholerae GN... [more]
RL7_VIBC35.787e-1355.7150S ribosomal protein L7/L12 OS=Vibrio cholerae se... [more]
RL7_SHELP5.787e-1355.7150S ribosomal protein L7/L12 OS=Shewanella loihica... [more]
RL7_GLUDA5.787e-1355.7150S ribosomal protein L7/L12 OS=Gluconacetobacter ... [more]
RL7_FLAJ15.787e-1352.8650S ribosomal protein L7/L12 OS=Flavobacterium joh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
back to top