CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ELUMP (50S ribosomal protein L7/L12 OS=Elusimicrobium minutum (strain Pei191) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF+V +    ++ +IAVIK VR +T L LKEAKDL++G PK  KE V+K +AE+ KK++ EAG  V++
Sbjct:   56 KTEFNVELTSAAADKKIAVIKVVREITGLGLKEAKDLVDGAPKVIKENVAKAEAEEMKKKVTEAGGVVTL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_DICNV (50S ribosomal protein L7/L12 OS=Dichelobacter nodosus (strain VCS1703A) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ E  +N ++AVIK VRA+T L LKEAK  ++  P   KE  SK++AE  KK LEEAGAK  +
Sbjct:   53 KTEFDVILTEAGAN-KVAVIKVVRAVTGLGLKEAKAAVDEAPSTIKEAASKEEAEKIKKDLEEAGAKAEL 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_DESAH (50S ribosomal protein L7/L12 OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 39/70 (55.71%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++ E   + +I VIK VRA+T L LKEAK L++  PK  KEG+ K++AE  K QLE AGA+VSV
Sbjct:   58 QTEFDVIL-EAAGDKKIGVIKEVRAITGLGLKEAKALVDEAPKPVKEGIVKEEAEKIKAQLEAAGAQVSV 126          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_DESAD (50S ribosomal protein L7/L12 OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++     N +IAVIKAVRALT L LKEAK  ++  P   KEGV K +AE+A KQLEEAGA+  +
Sbjct:   60 QTEFDVILKSAGGN-KIAVIKAVRALTGLGLKEAKAKVDEAPAAIKEGVEKAEAEEALKQLEEAGAEAEM 128          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CLONN (50S ribosomal protein L7/L12 OS=Clostridium novyi (strain NT) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K+EFDVV+    S  +I VIKAVR LT L LKEAK++++G PK  KEGV+K+ AE+ K +LEE GA + +
Sbjct:   52 KSEFDVVLANAGSQ-KIKVIKAVRELTGLGLKEAKEIVDGAPKTLKEGVAKEAAEEMKAKLEEVGATIEL 120          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BIFLO (50S ribosomal protein L7/L12 OS=Bifidobacterium longum GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDV++  V  + +I VIKAVRA+TNL L EAK L++G PK   E   K+DAE AK QLEEAGA V +
Sbjct:   57 KDEFDVILSAV-GDKKIQVIKAVRAITNLGLAEAKALVDGAPKAVLEKAKKEDAEKAKAQLEEAGASVEL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BIFLD (50S ribosomal protein L7/L12 OS=Bifidobacterium longum (strain DJO10A) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDV++  V  + +I VIKAVRA+TNL L EAK L++G PK   E   K+DAE AK QLEEAGA V +
Sbjct:   57 KDEFDVILSAV-GDKKIQVIKAVRAITNLGLAEAKALVDGAPKAVLEKAKKEDAEKAKAQLEEAGASVEL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BIFAA (50S ribosomal protein L7/L12 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDV++  V  + +I VIKAVRA+TNL L EAK L++G PK   E   K+DAE AK QLEEAGA V +
Sbjct:   57 KDEFDVILSAV-GDKKIQVIKAVRAITNLGLAEAKALVDGAPKAVLEKAKKEDAEKAKSQLEEAGATVEL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ALKMQ (50S ribosomal protein L7/L12 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 38/70 (54.29%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++D   S+ +I VIKAVR +T L LKEAK +++  PK  KE +SK+DAE  K +LEEAGA V++
Sbjct:   51 QTEFDVILDNAGSS-KINVIKAVREITGLGLKEAKGVVDEAPKAIKEAISKEDAEAIKAKLEEAGASVTL 119          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RK12_ASTLO (50S ribosomal protein L12, plastid OS=Astasia longa GN=rpl12 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.787e-13
Identity = 37/70 (52.86%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EF+++++   S+ RI +IK +R L ++ LKEAKDLIE LPK   EGVSK+ AE+ KK LEE+GA V +
Sbjct:   64 KLEFNIILESFISSQRIKLIKTLRDLISIGLKEAKDLIETLPKTIYEGVSKEFAEETKKTLEESGASVII 133          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_ELUMP5.787e-1351.4350S ribosomal protein L7/L12 OS=Elusimicrobium min... [more]
RL7_DICNV5.787e-1354.2950S ribosomal protein L7/L12 OS=Dichelobacter nodo... [more]
RL7_DESAH5.787e-1355.7150S ribosomal protein L7/L12 OS=Desulfobacterium a... [more]
RL7_DESAD5.787e-1357.1450S ribosomal protein L7/L12 OS=Desulfovibrio sale... [more]
RL7_CLONN5.787e-1354.2950S ribosomal protein L7/L12 OS=Clostridium novyi ... [more]
RL7_BIFLO5.787e-1357.1450S ribosomal protein L7/L12 OS=Bifidobacterium lo... [more]
RL7_BIFLD5.787e-1357.1450S ribosomal protein L7/L12 OS=Bifidobacterium lo... [more]
RL7_BIFAA5.787e-1357.1450S ribosomal protein L7/L12 OS=Bifidobacterium ad... [more]
RL7_ALKMQ5.787e-1354.2950S ribosomal protein L7/L12 OS=Alkaliphilus metal... [more]
RK12_ASTLO5.787e-1352.8650S ribosomal protein L12, plastid OS=Astasia long... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
back to top