CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ARCB4 (50S ribosomal protein L7/L12 OS=Arcobacter butzleri (strain RM4018) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.558e-13
Identity = 41/70 (58.57%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV+I +   + +I VIK +RA+T L LKEAKD  E  P   KEG+SK DAE  K QLE AGAKV V
Sbjct:   54 KTEFDVIIVD-SGDKKINVIKEIRAITGLGLKEAKDAAEQTPSTIKEGISKADAEAFKAQLEAAGAKVEV 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_VIBVY (50S ribosomal protein L7/L12 OS=Vibrio vulnificus (strain YJ016) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF+V++    +N ++AVIKAVR  T L LKEAK L++G P   KEGV K +AE  KK+LEEAGA V +
Sbjct:   53 QTEFNVILASAGAN-KVAVIKAVRGATGLGLKEAKALVDGAPAALKEGVEKAEAEALKKELEEAGATVEI 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_VIBVU (50S ribosomal protein L7/L12 OS=Vibrio vulnificus GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF+V++    +N ++AVIKAVR  T L LKEAK L++G P   KEGV K +AE  KK+LEEAGA V +
Sbjct:   53 QTEFNVILASAGAN-KVAVIKAVRGATGLGLKEAKALVDGAPAALKEGVEKAEAEALKKELEEAGATVEI 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SPHWW (50S ribosomal protein L7/L12 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDV++       +I VIK VRA+T L L EAK L+E  PK  KEGV+KD+AE  KKQLEEAGA V +
Sbjct:   57 KDEFDVILTG-DGGKKINVIKEVRAITGLGLTEAKTLVESAPKAVKEGVNKDEAEKLKKQLEEAGATVEL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RHOS5 (50S ribosomal protein L7/L12 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 43/70 (61.43%), Postives = 51/70 (72.86%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  +N +I VIK VRA+T L LKEAKDL+E    K KE  SK DAE  KK+LEEAGAKV +
Sbjct:   56 KTEFDVVLTDAGAN-KINVIKEVRAITGLGLKEAKDLVEA-GGKVKEAASKADAEAMKKKLEEAGAKVEL 123          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PSYA2 (50S ribosomal protein L7/L12 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDVV+       ++ VIKAVR  T L LKEAKDL+E  P   KEGV+K +AE+ KK+LEEAGA V +
Sbjct:   54 KDEFDVVLASF-GEKKVGVIKAVREATGLGLKEAKDLVESAPASIKEGVNKAEAEELKKKLEEAGATVEL 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NITSB (50S ribosomal protein L7/L12 OS=Nitratiruptor sp. (strain SB155-2) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +     +I  IK +R +T L LKEAK+  E  P   KEGVSK++AE+ KKQ EEAGAKV +
Sbjct:   58 KTEFDVVLTDAGPK-KINTIKVIRQVTGLGLKEAKEAAENTPTVIKEGVSKEEAEELKKQFEEAGAKVEI 126          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_KINRD (50S ribosomal protein L7/L12 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            ++EFDV+++    + +I VIK VRALT+L LKEAKDL++G PK   E V+KD AE AK QLE AGA V++
Sbjct:   59 QSEFDVILESA-GDKKIGVIKEVRALTSLGLKEAKDLVDGAPKPVLEKVAKDAAEKAKAQLEGAGATVTL 127          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CHLPB (50S ribosomal protein L7/L12 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 37/70 (52.86%), Postives = 54/70 (77.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV +  V +N +I VIKAVR++T L LKEAK++++G PK  KE VSK++AE   K+L++AGA+V +
Sbjct:   57 QTEFDVELKAVGAN-KINVIKAVRSITGLGLKEAKEMVDGAPKVVKEAVSKEEAEKVAKELKDAGAEVEL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BUCAT (50S ribosomal protein L7/L12 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=rplL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFD+ +  +  N +++VIK VR+ T L LKEAKDL+E  P   KE +SK+DAE  KK LE+ GA++ +
Sbjct:   53 KTEFDIFLKVIGPN-KVSVIKTVRSATGLGLKEAKDLVESAPTVLKENISKEDAESLKKTLEDVGAEIEI 121          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_ARCB47.558e-1358.5750S ribosomal protein L7/L12 OS=Arcobacter butzler... [more]
RL7_VIBVY9.871e-1354.2950S ribosomal protein L7/L12 OS=Vibrio vulnificus ... [more]
RL7_VIBVU9.871e-1354.2950S ribosomal protein L7/L12 OS=Vibrio vulnificus ... [more]
RL7_SPHWW9.871e-1357.1450S ribosomal protein L7/L12 OS=Sphingomonas witti... [more]
RL7_RHOS59.871e-1361.4350S ribosomal protein L7/L12 OS=Rhodobacter sphaer... [more]
RL7_PSYA29.871e-1355.7150S ribosomal protein L7/L12 OS=Psychrobacter arct... [more]
RL7_NITSB9.871e-1354.2950S ribosomal protein L7/L12 OS=Nitratiruptor sp. ... [more]
RL7_KINRD9.871e-1355.7150S ribosomal protein L7/L12 OS=Kineococcus radiot... [more]
RL7_CHLPB9.871e-1352.8650S ribosomal protein L7/L12 OS=Chlorobium phaeoba... [more]
RL7_BUCAT9.871e-1350.0050S ribosomal protein L7/L12 OS=Buchnera aphidicol... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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