CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BACV8 (50S ribosomal protein L7/L12 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KT FDVV+    + A++ V+KAV+    L LKEAKD+++G P   KEG++KD+AE  KK LEEAGA+V +
Sbjct:   55 KTSFDVVLKSAGA-AKLQVVKAVKEACGLGLKEAKDMVDGAPSTVKEGLAKDEAESLKKTLEEAGAEVEL 123          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SYNFM (50S ribosomal protein L7/L12 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF VVI  V  + +I VIK VRA+TNL LKEAKDL+E +P   KE + KD+AE   KQL EAGA V +
Sbjct:   58 QTEFSVVITGV-GDKKIQVIKEVRAITNLGLKEAKDLVEKVPGVVKEAIPKDEAEAIAKQLTEAGATVEI 126          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SOLUE (50S ribosomal protein L7/L12 OS=Solibacter usitatus (strain Ellin6076) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+    +N +I VIKAVR +T+L LKEAKDL++G PK  KEGVSK++A    K+  +AGA V V
Sbjct:   57 KTEFTVVLTGAGAN-KINVIKAVREVTSLGLKEAKDLVDGAPKPIKEGVSKEEAATIAKKFTDAGATVEV 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PROMA (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV++   ++A+I V+K VR  T L L +AK ++E  PK  KEG SK+DAE  KK +E  G KV++
Sbjct:   60 KTEFDVVLESFDASAKIKVLKEVRNATGLGLGDAKAMVEAAPKTIKEGASKEDAEALKKAIEAVGGKVTL 129          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_DICTD (50S ribosomal protein L7/L12 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KT FDV++ +  +N +I V+K VR +T L LKEAKDL++  PK  KEGVSK +AE+ K +LE  GA V +
Sbjct:   56 KTTFDVILKDAGAN-KIKVLKVVREITGLGLKEAKDLVDSTPKPIKEGVSKQEAEEIKAKLEAEGAVVEI 124          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_DICT6 (50S ribosomal protein L7/L12 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KT FDV++ +  +N +I V+K VR +T L LKEAKDL++  PK  KEGVSK +AE+ K +LE  GA V +
Sbjct:   56 KTTFDVILKDAGAN-KIKVLKVVREITGLGLKEAKDLVDSTPKPIKEGVSKQEAEEIKAKLEAEGAVVEI 124          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BORAP (50S ribosomal protein L7/L12 OS=Borrelia afzelii (strain PKo) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++     +++I VIK VR++T L L EAK L+E  PK  KEG+SK DAE+ KK+LE  GAKV V
Sbjct:   55 QTEFDVILMSF-GDSKINVIKEVRSITGLGLGEAKALVESAPKAIKEGLSKSDAEELKKKLEAVGAKVEV 123          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BIFLI (50S ribosomal protein L7/L12 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDV++  V  + +I VIKAVRA+T+L L EAK L++G PK   E   K+DAE AK QLEEAGA V +
Sbjct:   57 KDEFDVILSAV-GDKKIQVIKAVRAITSLGLAEAKALVDGAPKAVLEKAKKEDAEKAKAQLEEAGASVEL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BIFA0 (50S ribosomal protein L7/L12 OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EF VV+  V  + +I VIKAVRA+TNL L EAK L++G PK   E   K+DAE AK QLEEAGA V +
Sbjct:   57 KDEFTVVLSAV-GDKKIQVIKAVRAITNLGLAEAKALVDGAPKPVLENAKKEDAEKAKAQLEEAGATVEL 125          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BACTN (50S ribosomal protein L7/L12 OS=Bacteroides thetaiotaomicron GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KT FDVV+    + A++ V+KAV+    L LKEAKD+++G P   KEG++KD+AE  KK LEEAGA+V +
Sbjct:   55 KTSFDVVLKSAGA-AKLQVVKAVKEACGLGLKEAKDMVDGAPSVVKEGLAKDEAESLKKTLEEAGAEVEL 123          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_BACV81.684e-1251.4350S ribosomal protein L7/L12 OS=Bacteroides vulgat... [more]
RL7_SYNFM2.199e-1257.1450S ribosomal protein L7/L12 OS=Syntrophobacter fu... [more]
RL7_SOLUE2.199e-1255.7150S ribosomal protein L7/L12 OS=Solibacter usitatu... [more]
RL7_PROMA2.199e-1250.0050S ribosomal protein L7/L12 OS=Prochlorococcus ma... [more]
RL7_DICTD2.199e-1251.4350S ribosomal protein L7/L12 OS=Dictyoglomus turgi... [more]
RL7_DICT62.199e-1251.4350S ribosomal protein L7/L12 OS=Dictyoglomus therm... [more]
RL7_BORAP2.199e-1254.2950S ribosomal protein L7/L12 OS=Borrelia afzelii (... [more]
RL7_BIFLI2.199e-1255.7150S ribosomal protein L7/L12 OS=Bifidobacterium lo... [more]
RL7_BIFA02.199e-1257.1450S ribosomal protein L7/L12 OS=Bifidobacterium an... [more]
RL7_BACTN2.199e-1251.4350S ribosomal protein L7/L12 OS=Bacteroides thetai... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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