CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BACLD (50S ribosomal protein L7/L12 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFD+V+     + +I VIK VR +T L LKEAK+L++  PK  KEG++K++AE+ K +LEE GA V V
Sbjct:   54 KTEFDLVLAGA-GDQKIKVIKVVREITGLGLKEAKELVDNTPKPLKEGIAKEEAEELKAKLEEVGASVEV 122          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ALISL (50S ribosomal protein L7/L12 OS=Aliivibrio salmonicida (strain LFI1238) GN=rplL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.199e-12
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++  +  N +++VIKAVR  T L LKEAK L++  P   KEGV K +AE  K QLEEAGA V +
Sbjct:   52 QTEFDVILTAIGGN-KVSVIKAVRGATGLGLKEAKGLVDSAPAALKEGVDKAEAEGLKAQLEEAGATVEI 120          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_WOLSU (50S ribosomal protein L7/L12 OS=Wolinella succinogenes GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ +     +I VIK VR LT L LKEAKD +E  P   KEG +KDDA   K +LEEAGAKV +
Sbjct:   55 KTEFDVILLD-GGEKKINVIKVVRELTGLGLKEAKDAVEKTPTTIKEGANKDDAAAMKAKLEEAGAKVEI 123          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_VIBFM (50S ribosomal protein L7/L12 OS=Vibrio fischeri (strain MJ11) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            ++EFDV++    +N ++AVIKAVR  T L LKEAK L++  P   KEGV K +AE  K QLEEAGA V V
Sbjct:   53 QSEFDVILTSAGAN-KVAVIKAVRGATGLGLKEAKGLVDSAPAPLKEGVDKAEAEALKAQLEEAGASVEV 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_VIBF1 (50S ribosomal protein L7/L12 OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            ++EFDV++    +N ++AVIKAVR  T L LKEAK L++  P   KEGV K +AE  K QLEEAGA V V
Sbjct:   53 QSEFDVILTSAGAN-KVAVIKAVRGATGLGLKEAKGLVDSAPAPLKEGVDKAEAEALKAQLEEAGASVEV 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RUTMC (50S ribosomal protein L7/L12 OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDV++       ++AVIK  R++T L LKEAKD++E  P   KEG SK +AED +KQLEEAGA V +
Sbjct:   56 KDEFDVMLTSF-GKKKVAVIKMARSITGLGLKEAKDMVESAPVVIKEGASKVEAEDIQKQLEEAGASVEL 124          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PSYWF (50S ribosomal protein L7/L12 OS=Psychrobacter sp. (strain PRwf-1) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            K EFDV++     + ++ VIKAVR  T L LKEAK+L+EG P   KEG +K +AE+ KK+LEEAGA V +
Sbjct:   56 KDEFDVILASF-GDKKVGVIKAVREATGLGLKEAKELVEGAPAPIKEGANKVEAEELKKKLEEAGATVEL 124          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PSEAE (50S ribosomal protein L7/L12 OS=Pseudomonas aeruginosa GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF +V+ E   + ++ VIK VR LT L LKEAK +++G P   KEG SK++AE AKK LEEAGAKV +
Sbjct:   53 QTEFTIVLAEA-GDKKVNVIKVVRELTGLGLKEAKAVVDGAPGVVKEGASKEEAEAAKKALEEAGAKVEL 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PSEAB (50S ribosomal protein L7/L12 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF +V+ E   + ++ VIK VR LT L LKEAK +++G P   KEG SK++AE AKK LEEAGAKV +
Sbjct:   53 QTEFTIVLAEA-GDKKVNVIKVVRELTGLGLKEAKAVVDGAPGVVKEGASKEEAEAAKKALEEAGAKVEL 121          
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PSEA8 (50S ribosomal protein L7/L12 OS=Pseudomonas aeruginosa (strain LESB58) GN=rplL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF +V+ E   + ++ VIK VR LT L LKEAK +++G P   KEG SK++AE AKK LEEAGAKV +
Sbjct:   53 QTEFTIVLAEA-GDKKVNVIKVVRELTGLGLKEAKAVVDGAPGVVKEGASKEEAEAAKKALEEAGAKVEL 121          
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_BACLD2.199e-1251.4350S ribosomal protein L7/L12 OS=Bacillus lichenifo... [more]
RL7_ALISL2.199e-1252.8650S ribosomal protein L7/L12 OS=Aliivibrio salmoni... [more]
RL7_WOLSU2.872e-1255.7150S ribosomal protein L7/L12 OS=Wolinella succinog... [more]
RL7_VIBFM2.872e-1254.2950S ribosomal protein L7/L12 OS=Vibrio fischeri (s... [more]
RL7_VIBF12.872e-1254.2950S ribosomal protein L7/L12 OS=Vibrio fischeri (s... [more]
RL7_RUTMC2.872e-1252.8650S ribosomal protein L7/L12 OS=Ruthia magnifica s... [more]
RL7_PSYWF2.872e-1252.8650S ribosomal protein L7/L12 OS=Psychrobacter sp. ... [more]
RL7_PSEAE2.872e-1254.2950S ribosomal protein L7/L12 OS=Pseudomonas aerugi... [more]
RL7_PSEAB2.872e-1254.2950S ribosomal protein L7/L12 OS=Pseudomonas aerugi... [more]
RL7_PSEA82.872e-1254.2950S ribosomal protein L7/L12 OS=Pseudomonas aerugi... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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