CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NEIMA (50S ribosomal protein L7/L12 OS=Neisseria meningitidis serogroup A GN=rplL PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+     + ++ VIK VRA+T L LKEAKD+++G PK  KEGVSK +AED +KQLEEAGAKV +
Sbjct:   54 KTEFDVVLASA-GDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGAKVEI 122
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NEIM0 (50S ribosomal protein L7/L12 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+     + ++ VIK VRA+T L LKEAKD+++G PK  KEGVSK +AED +KQLEEAGAKV +
Sbjct:   54 KTEFDVVLASA-GDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGAKVEI 122
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_NEILA (50S ribosomal protein L7/L12 OS=Neisseria lactamica GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+     + ++ VIK VRA+T L LKEAKD+++G PK  KEGVSK +AED +KQLEEAGAKV +
Sbjct:   53 KTEFDVVLASA-GDQKVGVIKVVRAITGLGLKEAKDIVDGAPKTIKEGVSKAEAEDIQKQLEEAGAKVEI 121
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ENT38 (50S ribosomal protein L7/L12 OS=Enterobacter sp. (strain 638) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++  + +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKGIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BURTA (50S ribosomal protein L7/L12 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+ E  SN ++AVIKAVR LT L LKEAKDL++G PK  KEGV K  A++AKK+LE+AGAKV V
Sbjct:   55 KTEFTVVLAEAGSN-KVAVIKAVRELTGLGLKEAKDLVDGAPKPVKEGVDKAAADEAKKKLEDAGAKVEV 123
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BURCH (50S ribosomal protein L7/L12 OS=Burkholderia cenocepacia (strain HI2424) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+ E  +N +++VIKAVR LT L LKEAKDL++G PK  KEGV K  AE+AKK+LEEAGAKV V
Sbjct:   55 KTEFTVVLAEAGAN-KVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEGVDKAAAEEAKKKLEEAGAKVEV 123
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BURCC (50S ribosomal protein L7/L12 OS=Burkholderia cenocepacia (strain MC0-3) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+ E  +N +++VIKAVR LT L LKEAKDL++G PK  KEGV K  AE+AKK+LEEAGAKV V
Sbjct:   55 KTEFTVVLAEAGAN-KVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEGVDKAAAEEAKKKLEEAGAKVEV 123
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BURCA (50S ribosomal protein L7/L12 OS=Burkholderia cenocepacia (strain AU 1054) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 46/70 (65.71%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+ E  +N +++VIKAVR LT L LKEAKDL++G PK  KEGV K  AE+AKK+LEEAGAKV V
Sbjct:   55 KTEFTVVLAEAGAN-KVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEGVDKAAAEEAKKKLEEAGAKVEV 123
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BORPD (50S ribosomal protein L7/L12 OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.472e-16
Identity = 45/70 (64.29%), Postives = 56/70 (80.00%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEF VV+ E  +N +++VIKAVR LT L LKEAKDL++G PK  KEG++K DAE AKK+LEEAGAKV V
Sbjct:   57 QTEFTVVLAEAGAN-KVSVIKAVRELTGLGLKEAKDLVDGAPKPVKEGIAKADAEAAKKKLEEAGAKVEV 125
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SERP5 (50S ribosomal protein L7/L12 OS=Serratia proteamaculans (strain 568) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+  + +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVVLKGIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKDDAEALKKALEEAGAEVEV 120
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_NEIMA1.472e-1661.4350S ribosomal protein L7/L12 OS=Neisseria meningit... [more]
RL7_NEIM01.472e-1661.4350S ribosomal protein L7/L12 OS=Neisseria meningit... [more]
RL7_NEILA1.472e-1661.4350S ribosomal protein L7/L12 OS=Neisseria lactamic... [more]
RL7_ENT381.472e-1664.2950S ribosomal protein L7/L12 OS=Enterobacter sp. (... [more]
RL7_BURTA1.472e-1665.7150S ribosomal protein L7/L12 OS=Burkholderia thail... [more]
RL7_BURCH1.472e-1665.7150S ribosomal protein L7/L12 OS=Burkholderia cenoc... [more]
RL7_BURCC1.472e-1665.7150S ribosomal protein L7/L12 OS=Burkholderia cenoc... [more]
RL7_BURCA1.472e-1665.7150S ribosomal protein L7/L12 OS=Burkholderia cenoc... [more]
RL7_BORPD1.472e-1664.2950S ribosomal protein L7/L12 OS=Bordetella petrii ... [more]
RL7_SERP51.922e-1664.2950S ribosomal protein L7/L12 OS=Serratia proteamac... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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