CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GEOSL (50S ribosomal protein L7/L12 OS=Geobacter sulfurreducens GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N +I VIK VRALT L LKEAKDL++G PK  K GVSK++AE+AKKQL E+GA+V +
Sbjct:   58 KTEFDVILKSAGAN-KIGVIKVVRALTGLGLKEAKDLVDGAPKPVKNGVSKEEAEEAKKQLVESGAEVEI 126
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ERWT9 (50S ribosomal protein L7/L12 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+  + +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVVLKAIGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKDDAEALKKVLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BRUO2 (50S ribosomal protein L7/L12 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.922e-16
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ +  +N +I VIK VRALT L LKEAKDL+EG PK  KEGVSKD+AE  K QLE AGAKV +
Sbjct:   55 KTEFDVVLADGGAN-KINVIKEVRALTGLGLKEAKDLVEGAPKAVKEGVSKDEAEKIKAQLEAAGAKVEL 123
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SINMW (50S ribosomal protein L7/L12 OS=Sinorhizobium medicae (strain WSM419) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ E  +N +I VIK VRA+T L LKEAKDL+EG PK  KE VSK +A D KK+LE+AGAKV V
Sbjct:   56 KTEFDVILTEAGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEAVSKAEAADLKKKLEDAGAKVDV 124
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SHISS (50S ribosomal protein L7/L12 OS=Shigella sonnei (strain Ss046) GN=rplL PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALTY (50S ribosomal protein L7/L12 OS=Salmonella typhimurium GN=rplL PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALTI (50S ribosomal protein L7/L12 OS=Salmonella typhi GN=rplL PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALSV (50S ribosomal protein L7/L12 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALPK (50S ribosomal protein L7/L12 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALPC (50S ribosomal protein L7/L12 OS=Salmonella paratyphi C (strain RKS4594) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_GEOSL1.922e-1661.4350S ribosomal protein L7/L12 OS=Geobacter sulfurre... [more]
RL7_ERWT91.922e-1664.2950S ribosomal protein L7/L12 OS=Erwinia tasmaniens... [more]
RL7_BRUO21.922e-1667.1450S ribosomal protein L7/L12 OS=Brucella ovis (str... [more]
RL7_SINMW2.510e-1664.2950S ribosomal protein L7/L12 OS=Sinorhizobium medi... [more]
RL7_SHISS2.510e-1664.2950S ribosomal protein L7/L12 OS=Shigella sonnei (s... [more]
RL7_SALTY2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella typhimu... [more]
RL7_SALTI2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella typhi G... [more]
RL7_SALSV2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella schwarz... [more]
RL7_SALPK2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella paratyp... [more]
RL7_SALPC2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella paratyp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
back to top