CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALPB (50S ribosomal protein L7/L12 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALPA (50S ribosomal protein L7/L12 OS=Salmonella paratyphi A GN=rplL PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALNS (50S ribosomal protein L7/L12 OS=Salmonella newport (strain SL254) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALHS (50S ribosomal protein L7/L12 OS=Salmonella heidelberg (strain SL476) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALG2 (50S ribosomal protein L7/L12 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALEP (50S ribosomal protein L7/L12 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALDC (50S ribosomal protein L7/L12 OS=Salmonella dublin (strain CT_02021853) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALCH (50S ribosomal protein L7/L12 OS=Salmonella choleraesuis GN=rplL PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALAR (50S ribosomal protein L7/L12 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   54 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 122
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SALA4 (50S ribosomal protein L7/L12 OS=Salmonella agona (strain SL483) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_SALPB2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella paratyp... [more]
RL7_SALPA2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella paratyp... [more]
RL7_SALNS2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella newport... [more]
RL7_SALHS2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella heidelb... [more]
RL7_SALG22.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella gallina... [more]
RL7_SALEP2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella enterit... [more]
RL7_SALDC2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella dublin ... [more]
RL7_SALCH2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella cholera... [more]
RL7_SALAR2.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella arizona... [more]
RL7_SALA42.510e-1664.2950S ribosomal protein L7/L12 OS=Salmonella agona (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
back to top