CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_PROMH (50S ribosomal protein L7/L12 OS=Proteus mirabilis (strain HI4320) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++  +  N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKGIGGN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GEOSF (50S ribosomal protein L7/L12 OS=Geobacter sp. (strain FRC-32) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N +I VIK VRALT+L LKEAKDL++G P+  K GVSK++AE+AKKQL EAGA+V +
Sbjct:   57 KTEFDVILKAAGAN-KIGVIKVVRALTSLGLKEAKDLVDGAPQPLKTGVSKEEAEEAKKQLVEAGAEVEI 125
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ENTS8 (50S ribosomal protein L7/L12 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   53 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 121
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_CITK8 (50S ribosomal protein L7/L12 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BURCM (50S ribosomal protein L7/L12 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+ E  SN ++AVIKAVR LT L LKEAKD+++G PK  KEGV K  A++AKK+LE+AGAKV V
Sbjct:   55 KTEFTVVLTEAGSN-KVAVIKAVRELTGLGLKEAKDVVDGAPKAVKEGVDKAAADEAKKKLEDAGAKVEV 123
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_BURA4 (50S ribosomal protein L7/L12 OS=Burkholderia ambifaria (strain MC40-6) GN=rplL PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.510e-16
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEF VV+ E  SN ++AVIKAVR LT L LKEAKD+++G PK  KEGV K  A++AKK+LE+AGAKV V
Sbjct:   55 KTEFTVVLTEAGSN-KVAVIKAVRELTGLGLKEAKDVVDGAPKAVKEGVDKAAADEAKKKLEDAGAKVEV 123
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SULSY (50S ribosomal protein L7/L12 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N +I VIK VR +T L LKEAKDL++G PK  KEGVSKD+AE  KK+LEEAGA V V
Sbjct:   59 KTEFDVILTNAGAN-KINVIKVVREITGLGLKEAKDLVDGAPKPVKEGVSKDEAEQIKKKLEEAGATVEV 127
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SHIFL (50S ribosomal protein L7/L12 OS=Shigella flexneri GN=rplL PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SHIF8 (50S ribosomal protein L7/L12 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SHIDS (50S ribosomal protein L7/L12 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplL PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_PROMH2.510e-1664.2950S ribosomal protein L7/L12 OS=Proteus mirabilis ... [more]
RL7_GEOSF2.510e-1661.4350S ribosomal protein L7/L12 OS=Geobacter sp. (str... [more]
RL7_ENTS82.510e-1664.2950S ribosomal protein L7/L12 OS=Enterobacter sakaz... [more]
RL7_CITK82.510e-1664.2950S ribosomal protein L7/L12 OS=Citrobacter koseri... [more]
RL7_BURCM2.510e-1664.2950S ribosomal protein L7/L12 OS=Burkholderia ambif... [more]
RL7_BURA42.510e-1664.2950S ribosomal protein L7/L12 OS=Burkholderia ambif... [more]
RL7_SULSY3.278e-1662.8650S ribosomal protein L7/L12 OS=Sulfurihydrogenibi... [more]
RL7_SHIFL3.278e-1664.2950S ribosomal protein L7/L12 OS=Shigella flexneri ... [more]
RL7_SHIF83.278e-1664.2950S ribosomal protein L7/L12 OS=Shigella flexneri ... [more]
RL7_SHIDS3.278e-1664.2950S ribosomal protein L7/L12 OS=Shigella dysenteri... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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