CX296410

Overview
NameCX296410
Unique NameCX296410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SHIBS (50S ribosomal protein L7/L12 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplL PE=3 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_SHIB3 (50S ribosomal protein L7/L12 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RHIEC (50S ribosomal protein L7/L12 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ +  +N +I VIK VRA+T L LKEAKDL+EG PK  KEGVSK +A D KK+LE+AGAK  V
Sbjct:   58 KTEFDVILTDAGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGVSKAEAADIKKKLEDAGAKADV 126
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_RHIE6 (50S ribosomal protein L7/L12 OS=Rhizobium etli (strain CIAT 652) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++ +  +N +I VIK VRA+T L LKEAKDL+EG PK  KEGVSK +A D KK+LE+AGAK  V
Sbjct:   58 KTEFDVILTDAGAN-KINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGVSKAEAADIKKKLEDAGAKADV 126
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_KLEP7 (50S ribosomal protein L7/L12 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_KLEP3 (50S ribosomal protein L7/L12 OS=Klebsiella pneumoniae (strain 342) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGISKDDAEALKKSLEEAGAEVEV 120
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_HAES2 (50S ribosomal protein L7/L12 OS=Haemophilus somnus (strain 2336) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ E  +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SK +AE  KK+LEEAGAKV +
Sbjct:   53 KTEFDVVLAEAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPANLKEGISKAEAEALKKELEEAGAKVEI 121
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_HAES1 (50S ribosomal protein L7/L12 OS=Haemophilus somnus (strain 129Pt) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDVV+ E  +N ++AVIKAVR  T L LKEAKDL+E  P   KEG+SK +AE  KK+LEEAGAKV +
Sbjct:   53 KTEFDVVLAEAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPANLKEGISKAEAEALKKELEEAGAKVEI 121
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_GEOUR (50S ribosomal protein L7/L12 OS=Geobacter uraniireducens (strain Rf4) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            +TEFDV++    +N +IAVIK VRALT+L LKEAKDL++G P+  K GVSK++AE+AKKQL E+GA+V V
Sbjct:   57 QTEFDVILKAAGAN-KIAVIKVVRALTSLGLKEAKDLVDGAPQPVKSGVSKEEAEEAKKQLAESGAEVEV 125
[Close]
BLAST of CX296410 vs. ExPASy Swiss-Prot
Match: RL7_ESCF3 (50S ribosomal protein L7/L12 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   56 KTEFDVVIDEVPSNARIAVIKAVRALTNLALKEAKDLIEGLPKKFKEGVSKDDAEDAKKQLEEAGAKVSV 265
            KTEFDV++    +N ++AVIKAVR  T L LKEAKDL+E  P   KEGVSKDDAE  KK LEEAGA+V V
Sbjct:   52 KTEFDVILKAAGAN-KVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALKKALEEAGAEVEV 120
The following BLAST results are available for this feature:
BLAST of CX296410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL7_SHIBS3.278e-1664.2950S ribosomal protein L7/L12 OS=Shigella boydii se... [more]
RL7_SHIB33.278e-1664.2950S ribosomal protein L7/L12 OS=Shigella boydii se... [more]
RL7_RHIEC3.278e-1662.8650S ribosomal protein L7/L12 OS=Rhizobium etli (st... [more]
RL7_RHIE63.278e-1662.8650S ribosomal protein L7/L12 OS=Rhizobium etli (st... [more]
RL7_KLEP73.278e-1662.8650S ribosomal protein L7/L12 OS=Klebsiella pneumon... [more]
RL7_KLEP33.278e-1662.8650S ribosomal protein L7/L12 OS=Klebsiella pneumon... [more]
RL7_HAES23.278e-1662.8650S ribosomal protein L7/L12 OS=Haemophilus somnus... [more]
RL7_HAES13.278e-1662.8650S ribosomal protein L7/L12 OS=Haemophilus somnus... [more]
RL7_GEOUR3.278e-1661.4350S ribosomal protein L7/L12 OS=Geobacter uraniire... [more]
RL7_ESCF33.278e-1664.2950S ribosomal protein L7/L12 OS=Escherichia fergus... [more]

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Properties
Property NameValue
Genbank descriptionC05140D11SK FerrChloL1 Citrus clementina cDNA clone C05140D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296410 ID=CX296410; Name=CX296410; organism=Citrus clementina; type=EST; length=559bp
GAGGGTCGCCCCCGGTGCCCCCGGAGCCGAAGCGCCTGCTGCCGTGGAGG
AGGAGAAGACGGAGTTCGACGTCGTCATTGACGAGGTGCCCAGTAATGCG
AGAATCGCGGTCATTAAGGCCGTGAGAGCGCTGACGAACTTGGCTTTGAA
AGAGGCTAAGGACCTTATTGAAGGGTTGCCTAAGAAGTTCAAAGAAGGCG
TGTCGAAAGATGATGCTGAAGATGCTAAGAAACAGCTTGAAGAAGCTGGC
GCTAAAGTTTCCGTTGTTTAGAGATGATTATGTTGATTTTTGTGTGCTCT
CTTTTTTCTTTTGGTAATTTGTAGTTTTAAAAAAAGTGTAATTTGGATTT
GTAGTGAACATGAGTTTTTTCTGTTTTTGCACATGATACGTTTGTTAAAT
TGCCTGCATGAGTTGAAGTGTCTTGATGTATCTTTTGTGAAAAGAGCTGA
ATTGTGGGAGTTGAACGAGATAAGGTAACTCCAGATAATTAATGTTTTTC
CTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAAGGGG
GGGCCCGGT
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