CX296661

Overview
NameCX296661
Unique NameCX296661
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_OSTTA (Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus tauri GN=Ot01g06320 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.107e-22
Identity = 66/189 (34.92%), Postives = 98/189 (51.85%), Query Frame = 2
Query:  158 RRASIVWFRNDLRVHDNESLNTA-----NNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGAD--AVYAHREVSHDEVKSEEKIEAAMKDE------GIEVKYFWGSTLYHLDDLPFK----LGEMPTNYGGFREKVKG-VEIRKTIEA 670
            R   ++WFRNDLR+ DN  +  A      +  V V+PVY FD   +  S  G  + G  R  F +E V DL+ +L+A GSDL+VR GK   V+ EL      D   +    EV+ +E + +  +E A ++          ++  WGSTLYH+DD+PF     L ++P  +  FR KV+   ++R  I A
Sbjct:    3 RTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAGRGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAELTLTGANDRTIILTQTEVTSEETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRNKVESKCKVRDVIPA 191          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: CRYD_IDILO (Cryptochrome DASH OS=Idiomarina loihiensis GN=cry PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 51/181 (28.18%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  161 RASIVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFW---GSTLYHLDDLPFKLGEMPTNYGGFREKVKGVEIRKTIEALDQLKGLP 694
            R  +  FRNDLRV DN +L  A   S +++  +CF+P        G    G +R +FL +S+  LR  L+ RG  L+V  G  + +L EL      DA++  +   +      E+++  +  +      F     +TL+   +LPF+L ++P  +  FR+KV+ +    +++ ++ L  LP
Sbjct:   15 RLGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFTFLQQSLKQLRTELEMRGQKLIVLTGTFDRILTELISERQVDAIFLSQHQGY-----YERLQLGLLQQRFPFLPFHETPNNTLFSEQELPFELADLPETFSQFRKKVEPLSRNFSVQPVNALPSLP 190          
BLAST of CX296661 vs. ExPASy Swiss-Prot
Match: PHR_SYNP6 (Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 41/152 (26.97%), Postives = 76/152 (50.00%), Query Frame = 2
Query:  170 IVWFRNDLRVHDNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGF 625
            + W R DLR+ DN  L  A  +S  ++ ++C DP+    +        P R ++L   + +L++  Q  GS L++  G P+ ++ +LA+ + A+AVY ++++       + ++ AA+K  GI     W   L+  D +    G   + YG F
Sbjct:    6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMA-----PARVAYLQGCLQELQQRYQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPF 152          
The following BLAST results are available for this feature:
BLAST of CX296661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CRYD_OSTTA2.107e-2234.92Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_IDILO3.849e-1628.18Cryptochrome DASH OS=Idiomarina loihiensis GN=cry ... [more]
PHR_SYNP64.404e-1226.97Deoxyribodipyrimidine photo-lyase OS=Synechococcus... [more]

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Properties
Property NameValue
Genbank descriptionC05801D06SK FerrChloL1 Citrus clementina cDNA clone C05801D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296661 ID=CX296661; Name=CX296661; organism=Citrus clementina; type=EST; length=694bp
ACAAGCCTCTACGCTTACCCACATCTCTCTCTCCGCCTCCTCCACTCTCT
CTCCTTCCAAAATTTCATTCAAGTCCACACTCTCCGCAAACCCTCTTCAG
AGCCCTCTCTCTTTAGGGCCCCACCGCCCCTTGGACCCGAACAATGGGGC
CGCAATTCGTCGAGCTTCCATTGTTTGGTTCCGCAACGACTTGCGGGTCC
ATGATAACGAATCTCTCAACACCGCCAATAACGAGAGCGTCTCTGTTTTG
CCTGTTTATTGTTTCGACCCGAGGGATTACGGCAAATCCTCTTCTGGCTT
TGACAAAACGGGGCCGTATCGGGCATCGTTTTTGATTGAGTCAGTTTCTG
ACCTTCGCAAGAACTTGCAGGCACGTGGGTCTGATCTCGTGGTGAGAGTG
GGAAAGCCGGAGACTGTTCTGGTCGAGTTGGCTAAAGCCATTGGAGCTGA
TGCAGTGTACGCGCACAGAGAGGTGTCACATGATGAGGTTAAATCGGAGG
AGAAGATTGAGGCAGCGATGAAAGACGAGGGAATTGAAGTGAAGTACTTT
TGGGGAAGCACTTTGTACCATCTTGATGATTTGCCGTTTAAGTTGGGGGA
AATGCCGACTAATTATGGTGGGTTTAGAGAGAAGGTTAAGGGCGTGGAGA
TTCGGAAGACGATTGAGGCATTGGATCAGTTGAAGGGATTGCCG
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