CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOLC (50S ribosomal protein L17 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOL6 (50S ribosomal protein L17 OS=Escherichia coli O6 GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOL5 (50S ribosomal protein L17 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplQ PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOK1 (50S ribosomal protein L17 OS=Escherichia coli O1:K1 / APEC GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOHS (50S ribosomal protein L17 OS=Escherichia coli O9:H4 (strain HS) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECODH (50S ribosomal protein L17 OS=Escherichia coli (strain K12 / DH10B) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECOBW (50S ribosomal protein L17 OS=Escherichia coli (strain K12 / BW2952) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECO8A (50S ribosomal protein L17 OS=Escherichia coli O8 (strain IAI1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECO81 (50S ribosomal protein L17 OS=Escherichia coli O81 (strain ED1a) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
[Close]
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ECO7I (50S ribosomal protein L17 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplQ PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.738e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANE 405
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+ +
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRSEK 121
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_ECOLC7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli (str... [more]
RL17_ECOL67.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli O6 G... [more]
RL17_ECOL57.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli O6:K... [more]
RL17_ECOK17.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli O1:K... [more]
RL17_ECOHS7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli O9:H... [more]
RL17_ECODH7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli (str... [more]
RL17_ECOBW7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli (str... [more]
RL17_ECO8A7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli O8 (... [more]
RL17_ECO817.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli O81 ... [more]
RL17_ECO7I7.738e-2549.1250S ribosomal protein L17 OS=Escherichia coli O7:K... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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