CX296777
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_MAGSM (50S ribosomal protein L17 OS=Magnetococcus sp. (strain MC-1) GN=rplQ PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29 Identity = 62/112 (55.36%), Postives = 86/112 (76.79%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD-DVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396 R+L+R T HR +M++ M+ L KHERIETTV +AKE+R +A+ ++ LGK G L A R+A + + GD +V+HKLFT+LA R KDR GGYTR+L++R R GD APM++IE V+R Sbjct: 8 RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQALSILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIELVER 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOSL (50S ribosomal protein L17 OS=Geobacter sulfurreducens GN=rplQ PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28 Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQSKPAVPQPPPRAAMDPWTRSRLTKNFAPPKQEKSSDAEI 531 R+L R T HR++M R MV+ L HERI TT AKAKE+R +A+ M+ LGK G L A R+AA+++R V+ KLF+ +A RYK+R GGYTR+++ IR GD AP++ IE V+ E + K P A P A P++ + +E+ Sbjct: 8 RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAASYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKSKPTAPAQAVATKPAVEETREAAAAQPQEPEVEISEV 163
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOSM (50S ribosomal protein L17 OS=Geobacter sp. (strain M21) GN=rplQ PE=3 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28 Identity = 64/131 (48.85%), Postives = 91/131 (69.47%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQSKPAV-PQPPPRAA 453 R+L R T HR++M R MV+ ++HE+I TT AKAKE+R +A+ M+ LGK G L A R+AAA++R V+ KLFTE+A RY +R GGYTR+++ IR GD AP++ +E V+ E++ K A P P+AA Sbjct: 8 RRLGRTTSHRIAMFRNMVTSFLQHEKITTTDAKAKELRSIAEKMITLGKRGDLHATRQAAAYIRDKKVVTKLFTEIAPRYTERPGGYTRIIKLGIRPGDNAPVSVLELVEA--EMKPKKAAAKPAKAPKAA 136
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOLS (50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplQ PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.477e-28 Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399 R+L R T HR++M R MV+ L+ HERI TT AKAKE+R +A+ M+ LGK G L A R+AAA++R V+ KLF+ +A RYKDRAGGYTR+++ R+GDAA ++ IE V+ A Sbjct: 8 RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAAAYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIELVEEA 119
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_SYNFM (50S ribosomal protein L17 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplQ PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.176e-27 Identity = 66/153 (43.14%), Postives = 92/153 (60.13%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELRQSKPAVPQPPPRAAMDPWTRSRLTKNFAPPKQEKSSD 522 RKLNR T HR++M R MV+ L++HERI TT+ KAKE+RR AD M+ LGK G L A R+ A VR + + K+F EL RY+ R GGYTR++++ R GDA+PM IE + A + + + A P +A + P +EK+ D Sbjct: 8 RKLNRATSHRLAMFRNMVTSLLQHERIFTTLPKAKELRRWADWMISLGKRGDLHARRQVMACVREKETVQKIFAELGPRYQSRPGGYTRIVKAGYRRGDASPMCLIELITEAKQPPRKEKAKKPAPVQAE---------EASATPASEEKAQD 151
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DESHY (50S ribosomal protein L17 OS=Desulfitobacterium hafniense (strain Y51) GN=rplQ PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27 Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 +RKL R TGHR SMLR + + L+KHERI+TT A+AKEV +A+ M+ LGK+G L A R A ++ +DV+ KLFTE+A +Y DR GGYTR+++ R GDAA M IE V Sbjct: 3 YRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIAEKMITLGKQGDLAARRNALTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGDAAEMVLIELV 112
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_DESHD (50S ribosomal protein L17 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplQ PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.711e-27 Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1 Query: 61 FRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFV 390 +RKL R TGHR SMLR + + L+KHERI+TT A+AKEV +A+ M+ LGK+G L A R A ++ +DV+ KLFTE+A +Y DR GGYTR+++ R GDAA M IE V Sbjct: 3 YRKLGRNTGHRGSMLRNLATSLLKHERIQTTEARAKEVNAIAEKMITLGKQGDLAARRNALTYLLEEDVVTKLFTEIAPKYADRQGGYTRVIKVGPRRGDAAEMVLIELV 112
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOCS (50S ribosomal protein L17 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplQ PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.847e-27 Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRANELR 411 RK NR T HR++M M + L+KHE+I+TT+ KAK++R + + ++ LGK+G L R A A +R D++ KLFT LA RYK R GGYTR+L++ R GDAAPM IE VDR E + Sbjct: 8 RKFNRTTSHRLAMFSNMANALIKHEQIKTTLPKAKDLRPIVERLITLGKKGGLANKRLAYAELRDHDMVEKLFTTLAERYKGRPGGYTRVLKAGFRYGDAAPMGVIELVDRDPEAK 123
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOSF (50S ribosomal protein L17 OS=Geobacter sp. (strain FRC-32) GN=rplQ PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27 Identity = 66/156 (42.31%), Postives = 94/156 (60.26%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA-------NELRQSKPAVPQPPPRAAMDPWTRSRLTKNFAPPKQE 510 ++L R T HR++M R MV+ + HERI TT AKAK +R +A+ M+ LGK+G L A R+AA+F+R V+ KLFT +A RY +RAGGYTR+++ IR GD AP++ IE V+ ++ KPA A+ + T N A P +E Sbjct: 8 KRLGRTTSHRIAMYRNMVTSFLNHERITTTDAKAKGLRSIAEKMITLGKKGDLNAMRQAASFIRDKKVVTKLFTTIAPRYAERAGGYTRIIKLGIRPGDNAPLSVIELVEETIQAPKAKKKIAAKKPATKVAAKAASATAESAPVATANDAAPAEE 163
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GEOMG (50S ribosomal protein L17 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplQ PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27 Identity = 60/123 (48.78%), Postives = 88/123 (71.54%), Query Frame = 1 Query: 64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA--NELRQSKPA 426 R+L R T HR++M R MV+ ++HERI TT AKAKE+R +A+ M+ LGK G L A R+AA+++R V+ KLF+ +A RYK+R GGYTR+++ IR GD AP++ IE V+ + +++KPA Sbjct: 8 RRLGRTTSHRIAMFRNMVTSFLEHERITTTDAKAKELRSIAEKMITLGKRGDLHAQRQAASYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDNAPLSVIELVEEQVNKKEKKAKPA 130 The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bpback to top |