CX296777

Overview
NameCX296777
Unique NameCX296777
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_YERPN (50S ribosomal protein L17 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  ++   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDNVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_YERPG (50S ribosomal protein L17 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  ++   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDNVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_YERPE (50S ribosomal protein L17 OS=Yersinia pestis GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  ++   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDNVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_YERPB (50S ribosomal protein L17 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  ++   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDNVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_YERPA (50S ribosomal protein L17 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  ++   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDNVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_YERP3 (50S ribosomal protein L17 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  ++   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDRA
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDNVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_RHOFD (50S ribosomal protein L17 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            RKLNR + HR++MLR M++ L++HE I+TT+ KAKE+RR+ + M+ L KE ++   R A   +R  D + KLF +L  R+K R GGYTR+L+   RVGD APMA +E VDRA
Sbjct:    8 RKLNRTSEHRLAMLRNMMNSLIEHEVIKTTLPKAKELRRVVEPMITLAKEATVANRRLAFDRLRDRDSVVKLFNDLGPRFKARPGGYTRILKMGFRVGDNAPMALVELVDRA 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_GRABC (50S ribosomal protein L17 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDR 396
            RKL   + HR +M R M   L+KHE+I TT+ KAKE+R +A+ ++ LGK G L A R+A A +R + ++ KLF+ +A RYK R GGYTR+L++ +R GDAA MA IE VDR
Sbjct:    8 RKLGVTSSHRQAMFRNMAVALIKHEQITTTLPKAKELRPVAEKLITLGKRGGLHARRQAYAQLRDEVIVTKLFSAIAERYKARQGGYTRVLKAGVRYGDAASMAVIELVDR 118          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_ENT38 (50S ribosomal protein L17 OS=Enterobacter sp. (strain 638) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119          
BLAST of CX296777 vs. ExPASy Swiss-Prot
Match: RL17_EDWI9 (50S ribosomal protein L17 OS=Edwardsiella ictaluri (strain 93-146) GN=rplQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.011e-24
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   64 RKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRA 399
            R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR+
Sbjct:    8 RQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119          
The following BLAST results are available for this feature:
BLAST of CX296777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL17_YERPN1.011e-2450.0050S ribosomal protein L17 OS=Yersinia pestis bv. A... [more]
RL17_YERPG1.011e-2450.0050S ribosomal protein L17 OS=Yersinia pestis bv. A... [more]
RL17_YERPE1.011e-2450.0050S ribosomal protein L17 OS=Yersinia pestis GN=rp... [more]
RL17_YERPB1.011e-2450.0050S ribosomal protein L17 OS=Yersinia pseudotuberc... [more]
RL17_YERPA1.011e-2450.0050S ribosomal protein L17 OS=Yersinia pestis bv. A... [more]
RL17_YERP31.011e-2450.0050S ribosomal protein L17 OS=Yersinia pseudotuberc... [more]
RL17_RHOFD1.011e-2450.8950S ribosomal protein L17 OS=Rhodoferax ferrireduc... [more]
RL17_GRABC1.011e-2451.3550S ribosomal protein L17 OS=Granulibacter bethesd... [more]
RL17_ENT381.011e-2450.0050S ribosomal protein L17 OS=Enterobacter sp. (str... [more]
RL17_EDWI91.011e-2450.0050S ribosomal protein L17 OS=Edwardsiella ictaluri... [more]

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Properties
Property NameValue
Genbank descriptionC05802F12SK FerrChloL1 Citrus clementina cDNA clone C05802F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296777 ID=CX296777; Name=CX296777; organism=Citrus clementina; type=EST; length=694bp
TGCCGAATTCGGCACGAGGGCTTTCTGTTTCTCCGGTAAGGCTCCGTAAA
AATGACGAAATTCAGAAAGCTTAATCGGCCGACTGGTCACAGAATGTCCA
TGCTGAGAACGATGGTCTCGCAGTTGGTGAAGCACGAGCGTATTGAAACC
ACTGTTGCCAAGGCAAAAGAAGTTAGGCGACTTGCTGATAATATGGTGCA
ACTTGGGAAAGAGGGTTCCCTTTGTGCTGCGAGACGTGCTGCTGCATTTG
TTCGTGGGGATGATGTCATTCACAAGCTATTTACAGAATTAGCTTATCGA
TACAAGGATAGAGCTGGTGGATATACAAGACTGCTTAGGAGCCGTATACG
AGTTGGTGACGCTGCTCCAATGGCCTATATTGAGTTTGTTGACCGAGCAA
ATGAGCTTAGACAATCAAAACCTGCGGTTCCTCAACCACCACCAAGAGCT
GCCATGGATCCCTGGACAAGATCCCGGCTTACGAAGAATTTTGCACCCCC
AAAACAGGAGAAAAGCTCTGATGCTGAGATATGATGTAGAAGTCATTGTG
TTATTTGTATGGCTTGATCTCATTATAATATAGTTTGCGCTTTCCTCCAT
TCTTTTTTTATGTTAAACCTTCTTTCAATTTAGTGTTCTGAATTAAAATT
TTGGAAATGTAGAAATTGCTTGCTCAAAGGGGGGGCCCGGTACC
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