CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.914e-45
Identity = 95/177 (53.67%), Postives = 117/177 (66.10%), Query Frame = -3
Query:  198 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 728
            TGEDG++ISVP+  AV LA A+L+  E  V+  GL ARDSLRLEAGLCLYGND+++H TPVE  L+W +GKRRRA   F GA  I+ QL      RRVG    G P R+ S +   +G  IG +TSG  SPCLKKN+AMGYV     + GT + +EVR K     ++KMPFV T YY
Sbjct:  220 TGEDGVEISVPAAEAVHLAAALLKNPE--VKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGASVIVPQLKSKAQRRRVGLMCDGAPVRAQSPILSPEGTVIGAVTSGCPSPCLKKNVAMGYVPYEYSRPGTPLLVEVRRKQQPAVVSKMPFVSTNYY 394          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_HUMAN (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.499e-45
Identity = 97/177 (54.80%), Postives = 119/177 (67.23%), Query Frame = -3
Query:  198 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 728
            TGEDG++ISVP   AV LA AIL+  E  V+  GL ARDSLRLEAGLCLYGND+++H TPVE  L+W +GKRRRA   F GA+ I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT + +EVR K     ++KMPFVPT YY
Sbjct:  226 TGEDGVEISVPVAGAVHLATAILKNPE--VKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYY 400          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_DICDI (Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum GN=gcvT PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.497e-45
Identity = 97/184 (52.72%), Postives = 121/184 (65.76%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEKS----EGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLD-EGPPVRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +ISVPS++AV LA+  L  S    E  ++  GLGARDSLRLEAGLCLYG+D+   +TP+EA L W I KRRR EGGF GA  I KQL  +G P +RVG    G PAR    + D   N  IG++TSG  SP  +++I+M YVK+   K GT+V + +RGK     I+KMPFVPT Y K
Sbjct:  219 TGEDGFEISVPSKQAVRLAELFLATSNASIESGIKPAGLGARDSLRLEAGLCLYGHDLNDDITPIEASLNWLISKRRREEGGFPGASIIQKQLQKDGCPQKRVGVIINGAPAREGCLILDPSTNQEIGKVTSGTISPITRQSISMAYVKTPFSKIGTQVNVSIRGKPITATISKMPFVPTNYKK 402          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_MOUSE (Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.763e-44
Identity = 94/177 (53.11%), Postives = 119/177 (67.23%), Query Frame = -3
Query:  198 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 728
            TGEDG++ISVP+  AV LA  +L+  E  V+  GL ARDSLRLEAGLCLYGND+++H TPVE  L+W +GKRRR    F GA+ I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT++ +EVR K     ++KMPFVPT YY
Sbjct:  226 TGEDGVEISVPATGAVHLATTLLKNPE--VKLAGLAARDSLRLEAGLCLYGNDIDEHTTPVEGSLSWTLGKRRRIAMDFPGAKIIVPQLKGEVQRRRVGLICEGAPVRAHSPILNTEGTVIGTVTSGCPSPSLKKNVAMGYVPFKYSRPGTQLLVEVRRKQQMTVVSKMPFVPTNYY 400          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YEAST (Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=GCV1 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.680e-33
Identity = 84/187 (44.92%), Postives = 115/187 (61.50%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRR----AEGGFLGAEKILKQLDEGPPVR-RVGF--FAGGPPARSHSKVH-DEQGNPIGEITSGGFSPCLKK-NIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +IS+ +E+AV+ A+ +L  +   ++  GL ARDSLRLEAG+CLYG+++++ +TPVEA L W I K RR     +  F G  KI+ QL+     + RVGF     GP AR+  K+   +    +G +TSG  SP L   NI   YV+ G HK GTK+ ++VR K Y   + KMP VPT YYK
Sbjct:  215 TGEDGFEISIANEKAVEFAEQLL--ANPVMKPIGLAARDSLRLEAGMCLYGHELDESITPVEAALNWVISKSRRDLVDQKYWFNGYAKIMDQLNNKTYSKVRVGFKYLKKGPAARNGVKIFLPDAETEVGLVTSGSASPTLNNINIGQAYVQKGYHKKGTKLLVQVRNKFYPIELAKMPLVPTHYYK 399          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_HALOH (Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.838e-27
Identity = 66/173 (38.15%), Postives = 101/173 (58.38%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G ++ +  ++AV++ +A++E  S+  +   GLGARD+LRLE G CLYGND++++  P+EAGL W +   +  +  F+G   +LK  +EG   + VGF   G     H     + G+ IG +TSG  SP L + I MGYV+      G  + I VR +A  G + K+PF+
Sbjct:  188 TGELGYELYLSPDKAVEVWQALMEAGSDLGLIPAGLGARDTLRLEKGYCLYGNDIDENTHPLEAGLGWTV---KFDKASFIGKRALLKYKEEGLSRKLVGFKLKGRGIPRHGYPIKDNGDQIGVVTSGSMSPTLSEGIGMGYVRYDKATPGESITIVVRNRAITGEVVKLPFI 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PROMM (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvT PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 70/180 (38.89%), Postives = 103/180 (57.22%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG ++ + +E    L   +L  +EG +   GLG+RD+LRLEA + LYG DM+ + TP EAGL W +     A   F+G   + +Q ++GP  R VG    G     H        N +GEITSG +SP L++ IA+GY+ + L + G +V++E+RGK +   + K PF    Y +PS
Sbjct:  202 TGEDGFELLLKAEAGRALWLKLL--AEGVI-PCGLGSRDTLRLEAAMHLYGQDMDINTTPFEAGLGWLVHLEMPAP--FMGRTALEQQAEQGPIRRLVGLKLSGRAIARHGYPLLHNNNKVGEITSGTWSPSLEEAIALGYLPTALARIGNEVEVEIRGKHHRATVVKRPF----YRRPS 372          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACA2 (Aminomethyltransferase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvT PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.290e-25
Identity = 65/172 (37.79%), Postives = 99/172 (57.56%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++   +E AV L K IL   E + +   GLGARD+LR EA L LYG ++ + +TP+EAG+ +A+  + + +  F G   + +Q ++G P + VG          H     + G PIGE+T+G  SP LKKNI +  +K+   + GT+V++E+R K     I + PF
Sbjct:  190 TGEDGFELYCRNEDAVHLFKEILAAGEHEGLVPCGLGARDTLRFEAKLALYGQELTKDITPIEAGIGFAV--KHKKDSDFFGKSVLREQKEKGAPRKLVGLEMIEKGIPRHGYAVKKDGVPIGEVTTGTQSPTLKKNIGLALIKTEFSEVGTEVEVEIRKKTVKAKIVRTPF 359          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THETN (Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25
Identity = 68/179 (37.99%), Postives = 101/179 (56.42%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +I +P+E AV L + ILE  +   ++  GLGARD+LR EAGL LYGN++ + +TP+EAGL + +   +  +G F+G + +LKQ ++G   + VGF   G     H          IG +T+G FSP LKKNI +  + S   + G ++++ +R K     I    F    Y K
Sbjct:  199 TGEDGFEIYMPNEHAVTLWEKILEAGKDYGLKPAGLGARDTLRFEAGLPLYGNELGEDITPLEAGLGFFV---KFDKGNFIGKDALLKQKEQGLKRKLVGFEMIGNGIPRHGYEVQADNQKIGYVTTGYFSPTLKKNIGLALIDSKYAQIGNQIEVIIRNKPLKAVIVDKNFYKKNYKK 374          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CYAP8 (Aminomethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=gcvT PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.684e-25
Identity = 65/171 (38.01%), Postives = 95/171 (55.56%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ V  E   DL +++ +     V   GLGARD+LRLEA +CLY  D++ + TP+EAGL W +     ++G F+G + + KQ  +G   R VG    G     H      +G  +GE+TSG   P + K IA+ YV   L K GT +++E+RG+     + K PF
Sbjct:  197 TGEDGFEVMVDPEVGQDLWRSLFQAG---VTPCGLGARDTLRLEAAMCLYSQDIDDNTTPLEAGLNWLV--HLDSKGDFIGRDILEKQKAQGVERRLVGLQMEGRHIARHGYPVLYEGKIVGEVTSGTLPPTVGKAIALAYVPRSLGKVGTPLEVEIRGQNCQAIVVKKPF 362          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_BOVIN1.914e-4553.67Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]
GCST_HUMAN2.499e-4554.80Aminomethyltransferase, mitochondrial OS=Homo sapi... [more]
GCST_DICDI9.497e-4552.72Aminomethyltransferase, mitochondrial OS=Dictyoste... [more]
GCST_MOUSE2.763e-4453.11Aminomethyltransferase, mitochondrial OS=Mus muscu... [more]
GCST_YEAST1.680e-3344.92Aminomethyltransferase, mitochondrial OS=Saccharom... [more]
GCST_HALOH6.838e-2738.15Aminomethyltransferase OS=Halothermothrix orenii (... [more]
GCST_PROMM1.290e-2538.89Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_BACA21.290e-2537.79Aminomethyltransferase OS=Bacillus amyloliquefacie... [more]
GCST_THETN1.684e-2537.99Aminomethyltransferase OS=Thermoanaerobacter tengc... [more]
GCST_CYAP81.684e-2538.01Aminomethyltransferase OS=Cyanothece sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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