CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_DECAR (Aminomethyltransferase OS=Dechloromonas aromatica (strain RCB) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21
Identity = 64/171 (37.43%), Postives = 99/171 (57.89%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I +P+  A  L   +   +   V   GLGARD+LRLEAG+ LYG DM++ V+P++AGL W +      +  F+G   ++    +   +  +    G    R H KV  +QG+  GEITSG FSP L+++IA+  +  G+ + G +V++++RGKA    +TK  F
Sbjct:  195 TGEDGYEIMMPAGEAEALWNKL---NAAGVAPCGLGARDTLRLEAGMNLYGQDMDETVSPLDAGLAWTVS--LNTDRDFVGKAALVTNGQQKQFLGLILLDKG--VLRGHQKVMTKQGD--GEITSGSFSPTLQQSIALARLPLGV-QIGDEVEVDIRGKALKAKVTKPVF 355          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_COLP3 (Aminomethyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvT PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.607e-21
Identity = 68/173 (39.31%), Postives = 95/173 (54.91%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I VP+  A D  + +L++    V   GLGARD+LRLEAG+ LYG DM++ V+P+ A + W I      +  F+G + +  Q   G   + VG         RSH  V  E GN  GEITSG FSP L  ++A+  V   + K G  +++E+R K     +TK  FV
Sbjct:  190 TGEDGYEIIVPNNSAEDFWQKLLDEG---VVPCGLGARDTLRLEAGMNLYGLDMDETVSPLAANMAWTI-SWEPTDRDFIGRDVLTAQKAAGDQPKLVGLVLEAKGVLRSHQVVVTEFGN--GEITSGTFSPTLGHSVALARVPRSV-KVGDTIEVEMRKKLIKVQVTKPSFV 355          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURM1 (Aminomethyltransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.322e-21
Identity = 66/178 (37.08%), Postives = 95/178 (53.37%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF------AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ VP+     L  A+ +     VR  GLGARD+LRLEAG+ LYG DM+  V+P++AGL W +         F+G E + +   +G     VG          G   R+H KV    G   GEITSG FSP ++++IA   V + + + G  V +++R K     + K+PFV
Sbjct:  198 TGEDGFEVIVPAVHVEALWNALQQHG---VRPCGLGARDTLRLEAGMNLYGQDMDDTVSPLDAGLAWTVD--LSTPRAFVGREALER---DGTRAAFVGLILQKENGKAGGVLRAHQKVVTPHGE--GEITSGTFSPSMQESIAFARVPTAV-QVGDTVHVQIRDKQLPARVVKLPFV 364          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_DESRM (Aminomethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 64/174 (36.78%), Postives = 97/174 (55.75%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVG--FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGE G ++  P+  A  + +AI+   +   +R  GLGARD+LR EA L LYG+++   ++P+ AGL W + K  + E  F+G E +LKQ + G   + VG      G P + ++    ++G  +G ITSG F+P L KN+ +GYV+      G ++ I VR K     I K PF
Sbjct:  191 TGEAGFELYFPASHAERVWQAIMATGATDGLRPVGLGARDTLRFEACLALYGHELTDDISPLMAGLGWTV-KFNKPE--FVGKEPLLKQKEAGTTYQLVGLEMIDRGIPRQGYAIF--KEGQEVGWITSGTFAPTLGKNMGLGYVEIPFADVGKELNIMVRNKPLKARIVKKPF 359          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CLOBM (Aminomethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = -3
Query:  249 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 728
            TGEDG +I    E A  L  AIL   K EG  +  GLGARD+LR EA L LYGN+M++ +TP+E G+ + +  + + E  F+G + ++KQ  EG   + VGF     G P   +  + D  G  IG +T+G  SP L K I +  V+    K GT+  I+VR K
Sbjct:  193 TGEDGFEIYCKPEDAKGLWHAILNAGKEEG-AQPIGLGARDTLRFEASLLLYGNEMDETITPLEVGMGFFV--KLKVEEDFIGKDALIKQKAEGVTRKLVGFELIDKGIPRHGYEVIKD--GKVIGHVTTGYKSPTLNKAIGLALVEEQYSKIGTEFNIKVRKK 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CLOB6 (Aminomethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = -3
Query:  249 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 728
            TGEDG +I    E A  L  AIL   K EG  +  GLGARD+LR EA L LYGN+M++ +TP+E G+ + +  + + E  F+G + ++KQ  EG   + VGF     G P   +  + D  G  IG +T+G  SP L K I +  V+    K GT+  I+VR K
Sbjct:  193 TGEDGFEIYCKPEDAKGLWHAILNAGKEEG-AQPIGLGARDTLRFEASLLLYGNEMDETITPLEVGMGFFV--KLKVEEDFIGKDALIKQKAEGVTRKLVGFELLDKGIPRHGYEVIKD--GKVIGHVTTGYKSPTLNKAIGLALVEEQYSKIGTEFNIKVRKK 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACV8 (Aminomethyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 66/175 (37.71%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TG  G ++    E    + KAI E    + ++  GLGARD+LRLE G CLYGND+    +P+EAGL W     +  EG  F     + KQ  EG   + + F     G P   +  V+ + G  IGE+TSG  SP  K  I MGYV++     GT++ I+VRG+     + K PF
Sbjct:  189 TGAGGFELYFYPEAGQAIWKAIFEAGAPEGIKPIGLGARDTLRLEMGFCLYGNDLSDTTSPLEAGLGWI---TKFVEGKNFTSRALLEKQKAEGLKRKLIAFEMVDRGIPRHGYELVNAD-GEKIGEVTSGTMSPMRKIGIGMGYVQTAYTALGTEIFIDVRGRKLKAVVVKAPF 359          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACLD (Aminomethyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.563e-21
Identity = 63/173 (36.42%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I   +E A  + K +LE  K  G V   GLGARD+LR EA L LYG ++ + +TP+EAG+ +A+   + ++  F+G   +  Q + G   + VG          H      QG   GE+T+G  SP LKKN+ +  +K       T V++E+R K     I K PF
Sbjct:  190 TGEDGFEIYCRNEDAACIWKLLLETGKDSGLV-PCGLGARDTLRFEAKLPLYGQELSKDITPIEAGIGFAVKTNKASD--FIGKAVLASQKEHGADRKLVGLEMIDKGIPRHGYAVYYQGEQAGEVTTGTQSPTLKKNVGLALLKKEACALDTVVEVEIRNKRLKAKIVKTPF 359          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_RALEJ (Aminomethyltransferase OS=Ralstonia eutropha (strain JMP134) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 67/175 (38.29%), Postives = 97/175 (55.43%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ VP+E       A+ EK +   VR  GLGARD+LRLEAG+ LYG DM+ + +P++AGL W +    ++E  F G   +      G   + +G      G   R+H KV    G+  GEITSG FSP L ++IA   +  G+   G  V++E+R +     + K+PFV
Sbjct:  205 TGEDGFELVVPAENVA----AVWEKLDAAGVRPAGLGARDTLRLEAGMNLYGQDMDINTSPLDAGLAWTVD--LQSERDFTGKAALAA---AGQRQQFLGLILRDKGGVLRAHQKVVTAAGD--GEITSGTFSPSLSQSIAFARLPMGV-AVGDTVQVEIRDRKLAATVVKLPFV 367          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PROMT (Aminomethyltransferase OS=Prochlorococcus marinus (strain NATL2A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.249e-20
Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGE+G +     E A  + K+++      V   GLGARD+LRLEA + LYGND+    TP EAGL W +         F+G + + KQ + G   + VG      G   + +  +++ +   +G +TSG +SP L+K IA+ YV S + K  T++++E+R K +   I K PF
Sbjct:  202 TGEEGFEFLSSPETAKSIWKSLIASG---VTPCGLGARDTLRLEASMHLYGNDINLDTTPFEAGLGWLV--HLEMPNDFIGRKALEKQAEVGTQKKLVGIQVLDKGIARKGYPVLYNSE--TVGIVTSGTWSPTLQKPIALAYVPSEIAKVNTQIEVEIRRKKHPAIIVKRPF 367          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_DECAR5.607e-2137.43Aminomethyltransferase OS=Dechloromonas aromatica ... [more]
GCST_COLP35.607e-2139.31Aminomethyltransferase OS=Colwellia psychrerythrae... [more]
GCST_BURM17.322e-2137.08Aminomethyltransferase OS=Burkholderia multivorans... [more]
GCST_DESRM9.563e-2136.78Aminomethyltransferase OS=Desulfotomaculum reducen... [more]
GCST_CLOBM9.563e-2140.24Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_CLOB69.563e-2140.24Aminomethyltransferase OS=Clostridium botulinum (s... [more]
GCST_BACV89.563e-2137.71Aminomethyltransferase OS=Bacteroides vulgatus (st... [more]
GCST_BACLD9.563e-2136.42Aminomethyltransferase OS=Bacillus licheniformis (... [more]
GCST_RALEJ1.249e-2038.29Aminomethyltransferase OS=Ralstonia eutropha (stra... [more]
GCST_PROMT1.249e-2035.26Aminomethyltransferase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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