CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_NEIMA (Aminomethyltransferase OS=Neisseria meningitidis serogroup A GN=gcvT PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.200e-25
Identity = 69/173 (39.88%), Postives = 102/173 (58.96%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG-GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG+++ +P   AV   KA+       V+  GLGARD+LR+EAG+ LYGNDM+   +P+EAG+ W +  +  +   F+G   +L   ++G  V++VG   G G   R+H +V  ++G   GE TSG FSP LK++IA+  V       G   K+ +RGK  D  + K+PFV
Sbjct:  194 TGEDGVEVILPGTEAVAFFKAL---QAAGVQPCGLGARDTLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESR-DFVGKAALLALKEKGVAVKQVGLLLGKGGILRAHMEVLTDKGK--GETTSGVFSPSLKQSIAIARVPKDFD--GDTAKVLIRGKEADVRVLKLPFV 358          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THEP3 (Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25
Identity = 70/181 (38.67%), Postives = 104/181 (57.46%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEKS-EGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +I +P++ AV+L + I+E   E  ++  GLGARD+LR EAGL LYGN++ + +TP+EAG  + +   +  +G F+G + +LKQ +EG   + VGF     G P   +    D Q   IG +T+G FSP LKKNI +  + S   + G +++I +R K     I    F    Y K
Sbjct:  193 TGEDGFEIYMPNKYAVELWEKIIEVGKEYGLKPAGLGARDTLRFEAGLPLYGNELSEEITPLEAGFEFFV---KFDKGNFIGKDALLKQKEEGLKRKIVGFEMIDNGIPRHGYEVRADNQ--KIGYVTTGYFSPTLKKNIGLALIDSKYAQLGNQIEIVIRNKPLKALIISKNFYKKNYKK 368          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THEM4 (Aminomethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=gcvT PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.752e-25
Identity = 69/172 (40.12%), Postives = 97/172 (56.40%), Query Frame = -3
Query:  216 TGEDGLKI-SVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I +   +  + + K +L  +   V   GLGARD LRLEA L LYGNDM++ +TP+E G+ WA+    + E  F+G E + +QL+EG   R  GF         H     + G  IG +TSG FSP L + I M  ++ G +K+G  ++IE+R K     I KMPF
Sbjct:  189 TGEDGFEIYTTDKDGIIKIWKKLLNLN---VIPAGLGARDCLRLEASLLLYGNDMDETITPLEVGIKWAV----KFEKDFMGKEALKRQLEEGTSRRLKGFKIIDKGIARHGYKVFKDGKEIGYVTSGTFSPTLNQAIGMALIEKG-YKSGEIIEIEIRNKLVKAEIVKMPF 352          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PROM3 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.400e-25
Identity = 69/180 (38.33%), Postives = 101/180 (56.11%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG ++ + +E    L   +  ++EG +   GLG+RD+LRLEA + LYG DM+ + TP EAGL W +     A   F+G   + +Q ++GP  R VG    G     H        N +GEITSG +SP L + IA+GY+ + L + G +V +E+RGK +   + K PF    Y +PS
Sbjct:  202 TGEDGFELLLEAEAGRALWLQL--RAEGVI-PCGLGSRDTLRLEAAMHLYGQDMDINTTPFEAGLGWLVHLEMPAP--FMGRTALEQQAEQGPIRRLVGLKLSGRAIARHGYPLLHNNNKVGEITSGTWSPSLGEAIALGYLPTALARIGNEVAVEIRGKHHPATVVKRPF----YRRPS 372          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THEPX (Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 69/182 (37.91%), Postives = 107/182 (58.79%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEKS-EGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +I +P++ AV+L + I+E   E  ++  GLGARD+LR EAGL LYGN++ + +TP+EAG  + +   +  +G F+G + +LKQ +EG   + VGF     G P   +  + H+++   IG +T+G FSP LKKNI +  + S   + G +++I +R K     I    F    Y K
Sbjct:  193 TGEDGFEIYMPNKYAVELWEKIVEVGKEYGLKPAGLGARDTLRFEAGLPLYGNELSEEITPLEAGFEFFV---KFDKGNFIGKDALLKQKEEGLKRKIVGFEMIDNGIPRHGYEVRAHNQK---IGYVTTGYFSPTLKKNIGLALIDSKYAQLGNQIEIVIRNKPLKALIISKNFYKKNYKK 368          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ANASP (Aminomethyltransferase OS=Anabaena sp. (strain PCC 7120) GN=gcvT PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 66/171 (38.60%), Postives = 93/171 (54.39%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I V  E  V+L +++ +     V   GLGARD+LRLEA + LYG D++ + TP+EAGL W +      +G F+G   + +Q   G   R +G    G     H       G  +G +TSG  SP L   +A+ YV S L K G  +++E+RGKAY   + K PF
Sbjct:  204 TGEDGFEILVDPEVGVELWRSLYDAG---VIPCGLGARDTLRLEAAMALYGQDIDDNTTPLEAGLGWLV--HLDTKGDFIGRSVLEQQKATGVQRRLIGLQTQGRNIARHGYQVLSDGKVVGGVTSGTLSPTLGYPVALAYVPSKLAKVGQPLEVEIRGKAYPAVVVKRPF 369          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNS9 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9902) GN=gcvT PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 65/171 (38.01%), Postives = 92/171 (53.80%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ + +E    L   +LEK    V   GLGARD+LRLEA + LYG DM     P EAGL W +     A+  F+G + + +  + GP  R VG    G     H       G P+G +TSG +SP L++ IA+  + + L K GT + +E+RGKA    + + PF
Sbjct:  196 TGEDGAELLLTAEDGQLLWSQLLEKG---VAPCGLGARDTLRLEAAMHLYGQDMNADTNPFEAGLGWLVHLEMPAD--FIGRQALERAAETGPNKRLVGLKLEGRAIARHDYPVLHNGEPVGVVTSGTWSPTLEEPIALASIPTALAKLGTNLSVEIRGKAQPATVVRRPF 361          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_NEIMB (Aminomethyltransferase OS=Neisseria meningitidis serogroup B GN=gcvT PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.092e-24
Identity = 68/173 (39.31%), Postives = 102/173 (58.96%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVG-FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG+++ +P   AV   KA+    +  V+  GLGARD+LR+EAG+ LYGNDM+   +P+EAG+ W +  +  +   F+G   +L   ++G  V++VG     G   R+H +V  ++G   GE TSG FSP LK++IA+  V       G   K+ +RGK  D  + K+PFV
Sbjct:  194 TGEDGVEVILPGTEAVAFFKAL---QQAGVQPCGLGARDTLRMEAGMNLYGNDMDDDTSPLEAGMGWTVDLKDESR-DFVGKAALLALKEKGVAVKQVGLLLEKGGILRAHMEVLTDKGQ--GETTSGVFSPSLKQSIAIARVPKDFD--GDTAKVLMRGKEVDVRVLKLPFV 358          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_GEOKA (Aminomethyltransferase OS=Geobacillus kaustophilus GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 67/172 (38.95%), Postives = 97/172 (56.40%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++   +E A  L +AIL   +   V   GLGARD+LR EA L LYG ++   ++PVEAGL +A+  +   E  F+G   + +Q +EGPP R VG          H  +    G  +G +T+G  SP LKKNI +  VK+ +   G +V++++RGK    NI  +PF
Sbjct:  190 TGEDGFELYCKAEDAAALWEAILAAGARDSVLPCGLGARDTLRFEACLPLYGQELSDSISPVEAGLGFAV--KTEKETPFIGQAVLKRQKEEGPPRRLVGIEMIDRGIPRHGYLVFADGEEVGFVTTGTQSPTLKKNIGLALVKADVAAIGREVEVDIRGKRLKANIVPIPF 359          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ALCBS (Aminomethyltransferase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 72/172 (41.86%), Postives = 98/172 (56.98%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG++I +P+  A+ L + +LE     V   GLGARD+LRLEAGL LYGNDM++ +TP EA + W +    R    F+G + +L Q + G   +      G    R+H KV    G   GEITSG FSP L K+IA+  + +G   A  KV +E+R K     + K PFV
Sbjct:  188 TGEDGVEIMLPNADALTLWEQLLEAG---VSPIGLGARDTLRLEAGLNLYGNDMDESITPWEANMGWTVMLNDRE---FIGRQPLLNQKENGHSEQVGLILEGKGVLRAHQKVLMPNGEE-GEITSGTFSPTLGKSIALARLPAG---ATGKVDVEIRNKRQVAQVVKPPFV 349          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_NEIMA2.200e-2539.88Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_THEP33.752e-2538.67Aminomethyltransferase OS=Thermoanaerobacter pseud... [more]
GCST_THEM43.752e-2540.12Aminomethyltransferase OS=Thermosipho melanesiensi... [more]
GCST_PROM36.400e-2538.33Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_THEPX8.358e-2537.91Aminomethyltransferase OS=Thermoanaerobacter sp. (... [more]
GCST_ANASP8.358e-2538.60Aminomethyltransferase OS=Anabaena sp. (strain PCC... [more]
GCST_SYNS91.092e-2438.01Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_NEIMB1.092e-2439.31Aminomethyltransferase OS=Neisseria meningitidis s... [more]
GCST_GEOKA1.862e-2438.95Aminomethyltransferase OS=Geobacillus kaustophilus... [more]
GCST_ALCBS1.862e-2441.86Aminomethyltransferase OS=Alcanivorax borkumensis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
back to top