CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SALNS (Aminomethyltransferase OS=Salmonella newport (strain SL254) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q ++G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIA-WEPADRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVR----FTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVKVTKPVFV 357
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SALHS (Aminomethyltransferase OS=Salmonella heidelberg (strain SL476) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q ++G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIA-WEPADRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVR----FTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVKVTKPVFV 357
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SALG2 (Aminomethyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q ++G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIA-WEPADRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVR----FTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVKVTKPVFV 357
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SALEP (Aminomethyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q ++G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIA-WEPADRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVR----FTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVKVTKPVFV 357
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SALDC (Aminomethyltransferase OS=Salmonella dublin (strain CT_02021853) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q ++G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIA-WEPADRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVR----FTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVKVTKPVFV 357
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SALCH (Aminomethyltransferase OS=Salmonella choleraesuis GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q ++G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIA-WEPADRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVR----FTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVKVTKPVFV 357
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SALA4 (Aminomethyltransferase OS=Salmonella agona (strain SL483) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.604e-18
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q ++G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIA-WEPADRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVR----FTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVKVTKPVFV 357
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRAAA (Aminomethyltransferase OS=Frankia alni (strain ACN14a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 61/176 (34.66%), Postives = 89/176 (50.57%), Query Frame = -3 
Query:  207 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPP-ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPT 728
            TGE G ++    +    L  A+    EG      GLGARD+LR E G  L+G D+   +TPV+A   WA+G  +     F G E +L +   GP     G  + G    R H  V    G P+GE+TSG FSP L++ I +  +  G+ + G  V ++VRG+     + + PFVP+
Sbjct:  191 TGERGYELLPRWDDTPALWDALFAAGEGLGASPVGLGARDTLRTEMGYPLHGQDLSPTITPVQARSGWAVGWGKER---FWGREALLAERAAGPARLLWGLASTGRAIPRPHMPVTAADGAPVGEVTSGTFSPTLRQGIGLALLDRGVAE-GDTVNVDVRGRPGPMTVVRPPFVPS 362
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECOSM (Aminomethyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 64/179 (35.75%), Postives = 95/179 (53.07%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECOLU (Aminomethyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.401e-18
Identity = 64/179 (35.75%), Postives = 95/179 (53.07%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SALNS2.604e-1835.75Aminomethyltransferase OS=Salmonella newport (stra... [more]
GCST_SALHS2.604e-1835.75Aminomethyltransferase OS=Salmonella heidelberg (s... [more]
GCST_SALG22.604e-1835.75Aminomethyltransferase OS=Salmonella gallinarum (s... [more]
GCST_SALEP2.604e-1835.75Aminomethyltransferase OS=Salmonella enteritidis P... [more]
GCST_SALDC2.604e-1835.75Aminomethyltransferase OS=Salmonella dublin (strai... [more]
GCST_SALCH2.604e-1835.75Aminomethyltransferase OS=Salmonella choleraesuis ... [more]
GCST_SALA42.604e-1835.75Aminomethyltransferase OS=Salmonella agona (strain... [more]
GCST_FRAAA3.401e-1834.66Aminomethyltransferase OS=Frankia alni (strain ACN... [more]
GCST_ECOSM3.401e-1835.75Aminomethyltransferase OS=Escherichia coli (strain... [more]
GCST_ECOLU3.401e-1835.75Aminomethyltransferase OS=Escherichia coli O17:K52... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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