CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECO55 (Aminomethyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 64/179 (35.75%), Postives = 95/179 (53.07%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIA-WEPADRDFIGREALEVQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECO24 (Aminomethyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 64/179 (35.75%), Postives = 95/179 (53.07%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIA-WEPADRDFIGREALEVQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_AQUAE (Aminomethyltransferase OS=Aquifex aeolicus GN=gcvT PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 62/174 (35.63%), Postives = 95/174 (54.60%), Query Frame = -3
Query:  207 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPT 728
            TGEDG +I V  E   +L   +++ +    +  GLGARD LR+EAGL LYGN++ + +TP+E  L   +   +     F+G E +LK+  +   +  +     G P + +     ++   IG I+SG +SP L K IA+ +V     K G +V+IEVRG+   G + K PFV T
Sbjct:  181 TGEDGFEIYVSPEEGKELFLELVKLA----KPCGLGARDVLRIEAGLPLYGNELSEEITPIEVNLEKFVDFSKE----FIGKEAMLKKKVK-KKLFGLELTEKGIPRKGYRVFKGDR--EIGWISSGTYSPTLNKGIALCFVDIEERKEGNEVEIEVRGRRVRGVLRKYPFVRT 343          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ALTMD (Aminomethyltransferase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.442e-18
Identity = 68/173 (39.31%), Postives = 92/173 (53.18%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP+E+A    +A+L+     V+  GLGARD+LRLEAG+ LYG DM++ V+P+ A + W I     AE  F+G + +  Q + G   + VG          H  KV  E G   G ITSG FSP L  +IAM  V       G  V++E+R K     + K  FV
Sbjct:  190 TGEAGYEIMVPAEQAESFWQALLDAG---VKPCGLGARDTLRLEAGMNLYGQDMDETVSPLAANMGWTI-TWEPAERDFVGRKALEAQREAGTD-KLVGLVMTEKGVLRHGLKVKTESGE--GVITSGTFSPTLGHSIAMARVP---RDVGETVEVEMRKKWVTVKVVKPSFV 352          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FLAPJ (Aminomethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 57/173 (32.95%), Postives = 84/173 (48.55%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEG-KVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TG  G +I   +E A  +   I E  +   ++  GL ARD+LRLE G CLYGND+    +P+EAGL W      + +  F  +  + KQ +EG   + V F         H  ++ D  GN IG +TSG  SP +   I +GYV +      + + I +R       + K+PF
Sbjct:  189 TGSGGFEIYFKNEDAEAIWNKIFEAGKPFGIKPIGLAARDTLRLEMGFCLYGNDINDTTSPLEAGLGWI----TKFDKEFTNSANLKKQKEEGVARKLVAFEMQERAVPRHDYEIVDASGNVIGIVTSGTMSPSMNIGIGLGYVPTSFSTVDSDIFIRIRKNDVLAKVVKLPF 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ALKOO (Aminomethyltransferase OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvT PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 60/175 (34.29%), Postives = 98/175 (56.00%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I V +++   L   I+E  + + ++  GLGARD+LR EA L LYG+++++ ++P+EAGL + +   +     F+G + +++Q +EG   + VGF     G P + +  KV D+    IG +T+G  SP LKKNI    + +     GT + I+VR K     +    F
Sbjct:  193 TGEDGFEIYVDNDKVDALWDKIIEVGKDRGLKPAGLGARDTLRFEATLPLYGHEIDKDISPLEAGLGFFVKLNKE---NFIGKDALVRQKEEGLKRKVVGFEMKENGIPRQGYEVKVGDK---VIGVVTTGYNSPTLKKNIGYALIDAEYAALGTPIDIQVRKKTLKAEVVSKKF 361          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SALAR (Aminomethyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 63/179 (35.20%), Postives = 96/179 (53.63%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I      +  F+G E +  Q ++G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIA-WEPTDRDFIGREALEMQREKGHEQLVGLVMTEKGVLRNELPVR----FTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PSEA6 (Aminomethyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 64/172 (37.21%), Postives = 91/172 (52.91%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP+E+A D  + +L+     V   GLGARD+LRLEAG+ LYG DM++ ++P+ A + W I     AE  F+G + +  Q   G   + VG          H +    +G   G ITSG FSP L  +IAM  V + +   G   ++E+R K    N+ K  FV
Sbjct:  190 TGEAGYEIMVPNEQAADFWQKLLDAG---VAPCGLGARDTLRLEAGMNLYGQDMDETISPLAANMGWTI-TWEPAERNFVGRKALEAQKAAGTD-KLVGLVLTEKGVLRHGQAVQVEGGE-GIITSGTFSPTLGHSIAMARVPASV---GDTAQVEMRKKWVTVNVVKPSFV 352          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PHOLL (Aminomethyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.577e-18
Identity = 62/179 (34.64%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G ++++P E+A D  + +L      V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I  +   +  F+G E + KQ +EG        +R  G   GG          DE G    G ITSG FSP L  +IA+  V  G+   G +  +++R +     + K  FV
Sbjct:  190 TGEAGYEVALPKEQAADFWQKLLSVG---VKPAGLGARDTLRLEAGMNLYGQEMDETISPLVANMGWTIAWKPE-DRQFIGREALEKQREEGTEQLVGLVMREKGVLRGGLAV----SFTDEMGTLHSGVITSGTFSPTLGFSIALARVPQGI---GEQAVVQIRNREMPVQVVKPSFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERE8 (Aminomethyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 61/175 (34.86%), Postives = 93/175 (53.14%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ER V+  + +L      V+  GLGARD+LRLEAG+ LYG +M++ V+P+ A + W +      +  F+G E + +Q   G               R+   VH  D+ GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKERVVEFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTVAWLPE-DRQFIGREALEQQRANGTEQLVGLIMTEKGVLRNELPVHFSDDSGNQHVGVITSGSFSPTLGFSIALARVPAGI---GENAVVQIRNREMPVRVTKPGFV 357          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_ECO554.442e-1835.75Aminomethyltransferase OS=Escherichia coli (strain... [more]
GCST_ECO244.442e-1835.75Aminomethyltransferase OS=Escherichia coli O139:H2... [more]
GCST_AQUAE4.442e-1835.63Aminomethyltransferase OS=Aquifex aeolicus GN=gcvT... [more]
GCST_ALTMD4.442e-1839.31Aminomethyltransferase OS=Alteromonas macleodii (s... [more]
GCST_FLAPJ5.802e-1832.95Aminomethyltransferase OS=Flavobacterium psychroph... [more]
GCST_ALKOO5.802e-1834.29Aminomethyltransferase OS=Alkaliphilus oremlandii ... [more]
GCST_SALAR7.577e-1835.20Aminomethyltransferase OS=Salmonella arizonae (str... [more]
GCST_PSEA67.577e-1837.21Aminomethyltransferase OS=Pseudoalteromonas atlant... [more]
GCST_PHOLL7.577e-1834.64Aminomethyltransferase OS=Photorhabdus luminescens... [more]
GCST_YERE81.293e-1734.86Aminomethyltransferase OS=Yersinia enterocolitica ... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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