CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHIFL (Aminomethyltransferase OS=Shigella flexneri GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I      +  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIA-WEPTDRDFIGREALEVQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHIF8 (Aminomethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I      +  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIA-WEPTDRDFIGREALEVQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_MOOTA (Aminomethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 60/174 (34.48%), Postives = 92/174 (52.87%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKS-EGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++   +  A  + + IL    E  +   GLGARD+LRLEA L LYG+++   ++P+EAGL   +   R  +G F G E +  Q + G   + VG      G P   +  +    G  IG +TSG  +P L +NIA+  V +G    G +V++ +RG+     + K+PF
Sbjct:  192 TGEDGFELYFEAAAAPTMWRNILAAGREAGLVPAGLGARDTLRLEAALPLYGHELGPDISPLEAGLHRFV---RLEKGEFNGREALAAQREAGVRRQLVGLTMIDRGIPRPEYPVL--AAGKEIGYVTSGSLAPTLGQNIALALVAAGTVSTGGEVEVSIRGRVNRARVVKLPF 360          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LYSSC (Aminomethyltransferase OS=Lysinibacillus sphaericus (strain C3-41) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 60/181 (33.15%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG ++    E    L   IL+  + K V   GLG RD+LR EAGL LYG ++   ++P+EAG+ +A+   +     F+G + ++ Q + G P + VG          H     + G  IGE+T+G   P  K+N+    + S     G +++IE+RGK       K+  V T +YK S
Sbjct:  194 TGEDGFELYGAPEDIKALWGKILDAGQDKGVVPAGLGCRDTLRFEAGLPLYGQELSATISPLEAGIGFAVKLNKE---DFIGHDALVAQKENGLPRKLVGIEMIDKGIPRHGYKVFKDGKEIGEVTTGTQLPSSKRNVGHALIDSQFATIGNEMEIEIRGKQ-----LKVVTVETPFYKRS 366          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ENT38 (Aminomethyltransferase OS=Enterobacter sp. (strain 638) GN=gcvT PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.293e-17
Identity = 64/179 (35.75%), Postives = 96/179 (53.63%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A +   A++E     V+  GLGARD+LRLEAG+ LY  +M++ V+P+ A + W I     A+  F+G E +  Q ++G        +   G      P R      DE GN   G ITSG FSP L  +IA+  V +G+   G    +++R +    N+TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAAEFWHALVEAG---VKPAGLGARDTLRLEAGMNLYSQEMDETVSPLAANMGWTIA-WEPADREFIGREALEMQREKGTDQLVGLVMTEKGVLRNELPVR----FTDELGNQREGMITSGTFSPTLGYSIALARVPAGI---GETAIVQIRNREMPVNVTKPIFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ESCF3 (Aminomethyltransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECOUT (Aminomethyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECOL6 (Aminomethyltransferase OS=Escherichia coli O6 GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECO7I (Aminomethyltransferase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECO45 (Aminomethyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SHIFL1.293e-1735.20Aminomethyltransferase OS=Shigella flexneri GN=gcv... [more]
GCST_SHIF81.293e-1735.20Aminomethyltransferase OS=Shigella flexneri seroty... [more]
GCST_MOOTA1.293e-1734.48Aminomethyltransferase OS=Moorella thermoacetica (... [more]
GCST_LYSSC1.293e-1733.15Aminomethyltransferase OS=Lysinibacillus sphaericu... [more]
GCST_ENT381.293e-1735.75Aminomethyltransferase OS=Enterobacter sp. (strain... [more]
GCST_ESCF31.688e-1735.20Aminomethyltransferase OS=Escherichia fergusonii (... [more]
GCST_ECOUT1.688e-1735.20Aminomethyltransferase OS=Escherichia coli (strain... [more]
GCST_ECOL61.688e-1735.20Aminomethyltransferase OS=Escherichia coli O6 GN=g... [more]
GCST_ECO7I1.688e-1735.20Aminomethyltransferase OS=Escherichia coli O7:K1 (... [more]
GCST_ECO451.688e-1735.20Aminomethyltransferase OS=Escherichia coli O45:K1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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