CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECO27 (Aminomethyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ACIC5 (Aminomethyltransferase OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 64/183 (34.97%), Postives = 100/183 (54.64%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVD--LAKAILEKS-EGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRR-VGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +I +PS+ A    +   +LE   E  +   GLGAR++LRLE+ + LYG+++ Q +   EAGL       +  +G F+G+E + + + +G P R+ VG        AR   +V ++    +G +TSG  +P LKKNIA+ YV + L     +V +E+R      N  K   VPT +Y+
Sbjct:  198 TGEDGFEIYIPSDEATSERVWNEVLEAGKEFGIVPCGLGARNTLRLESAMALYGHEISQDIDVFEAGLDRYC---KLDKGTFVGSEALKQVVAQGGPKRKLVGLEMIDRGIARDGYRVLNDTQQAVGYVTSGSPAPFLKKNIALAYVPTELATLDREVFVEIR-----NNPVKARIVPTPFYR 372          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHIDS (Aminomethyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDVQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_NATTJ (Aminomethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 57/174 (32.76%), Postives = 93/174 (53.45%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGE+G +I + +E    L + I +  E   ++  GLGARD LR E  L LYGN++   +TP+EA L   +   +  +  FLG + ++ Q ++G     VGF     G P  ++  + D  G  IG ++SG  SP L K + +G++K    + G ++++++R K     I K PF
Sbjct:  192 TGENGFEIYIKAEETAKLWEKIEDAGENDGLKPIGLGARDVLRFEVCLPLYGNELSPEITPLEARLNPFVKLNKTED--FLGKDVLVNQKEQGLERVLVGFEMIDRGIPRTNYILMKD--GQEIGFVSSGSQSPTLDKALGLGFIKPEHDQEGNEIEVKIRKKTAKAKIVKTPF 361          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ECO81 (Aminomethyltransferase OS=Escherichia coli O81 (strain ED1a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.205e-17
Identity = 63/179 (35.20%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A D  +A++E     V+  GLGARD+LRLEAG+ LY  +M++ ++P+ A + W I     A+  F+G E +  Q + G        +   G      P R      D QGN   G ITSG FSP L  +IA+  V  G+   G    +++R +     +TK  FV
Sbjct:  190 TGEVGYEIALPNEKAADFWRALVEAG---VKPCGLGARDTLRLEAGMNLYSQEMDETISPLAANMGWTIA-WEPADRDFIGREALEAQREHGTEKLVGLVMTEKGVLRNELPVR----FTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI---GETAIVQIRNREMPVKVTKPVFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THEGJ (Probable aminomethyltransferase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 63/177 (35.59%), Postives = 93/177 (52.54%), Query Frame = -3
Query:  198 ERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQ---------HVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 692
            E+A+ + + ILE+ E   ++  GLGARD+LRLEAG  LYGN+ ++          VTP++A L +AI   +     F+G E +LKQ + G   + V F     G P   +  + +  G  IGE+TSG  SP L   I + +VK    K G ++++E+RGK         PF   K Y
Sbjct:  222 EKALHVWERILEEGEKYGIKPAGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLDFAIFWDKE----FIGKEALLKQKERGLGRKMVHFKMVDRGIPREGYKVLAN--GEVIGEVTSGTLSPLLGIGIGIAFVKEEYAKPGLEIEVEIRGKPKRAVTVSPPFYDPKKY 392          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_NOCFA (Aminomethyltransferase OS=Nocardia farcinica GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 58/177 (32.77%), Postives = 93/177 (52.54%), Query Frame = -3
Query:  204 TGEDGLKISVPSERAVDLAKAILEKSEGKV-RXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 728
            TGE G ++      A  + +A+LE+      +  GLGARD+LR E G  L+G+++ + ++PV+A   WA+G R+     F G   + ++   GP    +G  A         +     G P+GE TSG FSP LK  IA+  + +G   + G +V ++VRG+     + K PFVP++
Sbjct:  191 TGEHGYEVLPRWADAEPVFRALLEQVRAADGQPAGLGARDTLRTEMGYPLHGHELSREISPVQARTGWAVGWRKPQ---FWGKAALEQEKAAGPRRILMGLKAIDRGVLRQGQPVLRDGEPVGETTSGTFSPTLKVGIALALLDTGAGLEPGAEVAVDVRGRRLRCEVVKPPFVPSR 364          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CORJK (Aminomethyltransferase OS=Corynebacterium jeikeium (strain K411) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 60/179 (33.52%), Postives = 96/179 (53.63%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDL-AKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA-GGPPARSHSKVHDEQG-NPIGEITSGGFSPCLKKNIAMGY-----VKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ V ++ A  +  KA+ + ++      GL  RD+LRLEAG+ LYGN++   +TPV+AGL   I    +++  F+G + I+   ++G     +G    G   AR   +V    G   IG +TSG  SP L   +A+ Y     V SG    G  V++++RGK ++  +  +PF
Sbjct:  208 TGEDGFELIVANDGAETVWTKAMDQAAQLGGLPCGLACRDTLRLEAGMPLYGNELSLKLTPVDAGL--GILAATKSKDSFVGRDAIVSAKEKGTQQVLIGLAGEGRRAARGGYEVFAGDGEKAIGAVTSGALSPTLGHPVALAYVAKSAVSSGAAAEGATVEVDIRGKRFEYKVVALPF 384          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_STRCO (Aminomethyltransferase OS=Streptomyces coelicolor GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 63/176 (35.80%), Postives = 88/176 (50.00%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEG---PPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTK-VKIEVRGKAYDGNITKMPF 728
            TGEDG ++ V  E AV L +A+    E   +   GL  RD+LRLEAG+ LYGN++   +TP +AGL   +  +   EG F+G   + +  +     PP   VG  A G             G  IGE+TSG  SP L + IAM YV       GT+ V +++RG      +  +PF
Sbjct:  194 TGEDGFELFVKPEHAVGLWQALTGAGEAAGLIPCGLSCRDTLRLEAGMPLYGNELSTALTPFDAGLGRVV--KFEKEGDFVGRAALTEAAERAASRPPRVLVGLVAEGRRVPRSGYRVVAGGEVIGEVTSGAPSPTLGRPIAMAYVDPAHAAPGTEGVGVDIRGSHEPYEVVALPF 367          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ENTS8 (Aminomethyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.761e-17
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+A      ++E     V+  GLGARD+LRLEAG+ LYG +M++ V+P+ A + W I  +   +  F+G + +  Q + G        +   G   G  P R      D+QGN   G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIAMPNEKAAGFWSQLVEAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWQPE-DRAFIGRDALEAQRENGTEQLVGLVMTEKGVLRGELPVR----FTDDQGNAREGIITSGTFSPTLGYSIALARVPAGI---GDTAIVQIRNREMPVKVTKPIFV 357          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_ECO271.688e-1735.20Aminomethyltransferase OS=Escherichia coli O127:H6... [more]
GCST_ACIC51.688e-1734.97Aminomethyltransferase OS=Acidobacterium capsulatu... [more]
GCST_SHIDS2.205e-1735.20Aminomethyltransferase OS=Shigella dysenteriae ser... [more]
GCST_NATTJ2.205e-1732.76Aminomethyltransferase OS=Natranaerobius thermophi... [more]
GCST_ECO812.205e-1735.20Aminomethyltransferase OS=Escherichia coli O81 (st... [more]
GCST_THEGJ2.879e-1735.59Probable aminomethyltransferase OS=Thermococcus ga... [more]
GCST_NOCFA2.879e-1732.77Aminomethyltransferase OS=Nocardia farcinica GN=gc... [more]
GCST_CORJK2.879e-1733.52Aminomethyltransferase OS=Corynebacterium jeikeium... [more]
GCST_STRCO3.761e-1735.80Aminomethyltransferase OS=Streptomyces coelicolor ... [more]
GCST_ENTS83.761e-1734.64Aminomethyltransferase OS=Enterobacter sakazakii (... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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