CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THESQ (Aminomethyltransferase OS=Thermotoga sp. (strain RQ2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = -3
Query:  216 TGEDGLKISVP---SERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ +    S +  D    +L K +G  R  GLGARD  RLEA   LYG DM+++  P E GL+W +    + +  F+G E +LK  ++          +G   AR   +V  + G  +GEITSG FSP L K+IA+  V   +        +   GK  +  + K PF
Sbjct:  189 TGEDGFELMIEAKNSPKVWDALMNLLRKIDG--RPAGLGARDVCRLEATYLLYGQDMDENTNPFEVGLSWVV----KLDKDFVGKEALLKAKEKVERKLVALELSGKRIARKGYEV-SKNGERVGEITSGNFSPTLGKSIALALVSKSVKIGDQLGVVFPGGKLVEALVVKKPF 355          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THEP1 (Aminomethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 62/175 (35.43%), Postives = 93/175 (53.14%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAV---DLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEV-RGKAYDGNITKMPF 728
            TGEDG ++ + ++ A    D    +L K +G  R  GLGARD  RLEA   LYG DM++   P+E GL+W +    + +  F+G E +LK  ++          +G   AR   +V  + G  +GEITSG FSP L K+IA+  V   + K G ++++    GK  +  + K PF
Sbjct:  189 TGEDGFELMLEAKDAPKVWDALMNLLRKIDG--RPAGLGARDVCRLEATYLLYGQDMDESTNPLEVGLSWVV----KLDKDFVGKEALLKAKEKVERKLVALELSGKRIARKGYEVL-KNGERVGEITSGNFSPTLGKSIALALVSKSV-KVGDQLEVAFPGGKLVEALVVKKPF 355          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PYRHO (Probable aminomethyltransferase OS=Pyrococcus horikoshii GN=gcvT PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 69/205 (33.66%), Postives = 103/205 (50.24%), Query Frame = -3
Query:  198 TGEDGLKISVPS--------------ERAVDLAKAILEKSEGK---VRXTGLGARDSLRLEAGLCLYGNDMEQ---------HVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 728
            TGE+G ++ +                E+A+ + + ILE  EGK   ++  GLGARD+LRLEAG  LYGN+ ++          VTP++A L +AI      +  F+G + +LKQ + G   + V F     G P   + KV+   G  IGE+TSG  SP L   I + +VK    K G ++++E+RG+         PF   K Y
Sbjct:  196 TGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILE--EGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAI----YWDKDFIGKDALLKQKERGVGRKLVHFKMIDKGIPREGY-KVY-ANGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGQRKKAVTVTPPFYDPKKY 392          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRATW (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+ +      ++LE      +  GLGARD+LRLEAG+ LYG DM+   TP+E GL W++         F+G +  L +  +G   + VG            +  D      G ITSG FSP LK  I + YV     K      + +RGK  +  + K  FV
Sbjct:  188 TGEDGFEVILPATQVKKFWDSLLENG---AQPAGLGARDTLRLEAGMHLYGADMDTSTTPLERGLGWSVDLSDE-HRDFIGKKAYLAKKAQGVDTKWVGVVLKTKGVLRAGQEIDFDNGEKGYITSGSFSPTLKVAIGLAYVP----KQADNPVVNIRGKELEVELVKPKFV 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRATO (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+ +      ++LE      +  GLGARD+LRLEAG+ LYG DM+   TP+E GL W++         F+G +  L +  +G   + VG            +  D      G ITSG FSP LK  I + YV     K      + +RGK  +  + K  FV
Sbjct:  188 TGEDGFEVILPATQVKKFWDSLLENG---AQPAGLGARDTLRLEAGMHLYGADMDTSTTPLERGLGWSVDLSDE-HRDFIGKKAYLAKKAQGVDTKWVGVVLKTKGVLRAGQEIDFDNGEKGYITSGSFSPTLKVAIGLAYVP----KQADNPVVNIRGKELEVELVKPKFV 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRATM (Aminomethyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+ +      ++LE      +  GLGARD+LRLEAG+ LYG DM+   TP+E GL W++         F+G +  L +  +G   + VG            +  D      G ITSG FSP LK  I + YV     K      + +RGK  +  + K  FV
Sbjct:  188 TGEDGFEVILPATQVKKFWDSLLENG---AQPAGLGARDTLRLEAGMHLYGADMDTSTTPLERGLGWSVDLSDE-HRDFIGKKAYLAKKAQGVDTKWVGVVLKTKGVLRAGQEIDFDNGEKGYITSGSFSPTLKVAIGLAYVP----KQADNPVVNIRGKELEVELVKPKFV 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRATH (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+ +      ++LE      +  GLGARD+LRLEAG+ LYG DM+   TP+E GL W++         F+G +  L +  +G   + VG            +  D      G ITSG FSP LK  I + YV     K      + +RGK  +  + K  FV
Sbjct:  188 TGEDGFEVILPATQVKKFWDSLLENG---AQPAGLGARDTLRLEAGMHLYGADMDTSTTPLERGLGWSVDLSDE-HRDFIGKKAYLAKKAQGVDTKWVGVVLKTKGVLRAGQEIDFDNGEKGYITSGSFSPTLKVAIGLAYVP----KQADNPVVNIRGKELEVELVKPKFV 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRATF (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gcvT PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.912e-17
Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+ +      ++LE      +  GLGARD+LRLEAG+ LYG DM+   TP+E GL W++         F+G +  L +  +G   + VG            +  D      G ITSG FSP LK  I + YV     K      + +RGK  +  + K  FV
Sbjct:  188 TGEDGFEVILPATQVKKFWDSLLENG---AQPAGLGARDTLRLEAGMHLYGADMDTSTTPLERGLGWSVDLSDE-HRDFIGKKAYLAKKAQGVDTKWVGVVLKTKGVLRAGQEIDFDNGEKGYITSGSFSPTLKVAIGLAYVP----KQADNPVVNIRGKELEVELVKPKFV 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_IDILO (Aminomethyltransferase OS=Idiomarina loihiensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.415e-17
Identity = 65/173 (37.57%), Postives = 94/173 (54.34%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSH-SKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP+E+   L   +L+     V   GLGARD+LRLEAG+ LYG DM++++TP+EA + W++     A+  F+G + + ++  EG   + VG          H  KV  E G   G ITSG FSP L  ++AM  V S +   G   ++E+R K     + K  FV
Sbjct:  190 TGEKGYEIVVPAEQLEALWNDLLKAD---VAPCGLGARDTLRLEAGMNLYGQDMDENITPLEANMGWSVA-FEPADRDFIGRKALEQKKAEGHD-KLVGLVMEEKGVLRHGQKVTVEGGE--GIITSGTFSPTLGFSVAMARVPSSV---GDTAEVEMRKKQMPVKVVKPGFV 352          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRATN (Aminomethyltransferase OS=Francisella tularensis subsp. novicida (strain U112) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.378e-17
Identity = 58/172 (33.72%), Postives = 83/172 (48.26%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+ +      ++LE      +  GLGARD+LRLEAG+ LYG DM+   TP+E GL W++         F+G +  L +  +G   + VG            +  D      G ITSG FSP LK  I + YV     K      + +RGK  +  + K  FV
Sbjct:  188 TGEDGFEVILPTTQVKKFWDSLLENG---AQPAGLGARDTLRLEAGMHLYGADMDISTTPLERGLGWSVDLSDE-HRDFIGKKAYLAKKAQGVDTKWVGVVLKTKGVLRAGQEIDFDNGEKGYITSGSFSPTLKVAIGLAYVP----KQADNPVVNIRGKELEVELVKPKFV 351          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_THESQ4.912e-1734.48Aminomethyltransferase OS=Thermotoga sp. (strain R... [more]
GCST_THEP14.912e-1735.43Aminomethyltransferase OS=Thermotoga petrophila (s... [more]
GCST_PYRHO4.912e-1733.66Probable aminomethyltransferase OS=Pyrococcus hori... [more]
GCST_FRATW4.912e-1733.72Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATO4.912e-1733.72Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATM4.912e-1733.72Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATH4.912e-1733.72Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRATF4.912e-1733.72Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_IDILO6.415e-1737.57Aminomethyltransferase OS=Idiomarina loihiensis GN... [more]
GCST_FRATN8.378e-1733.72Aminomethyltransferase OS=Francisella tularensis s... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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