CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ERWCT (Aminomethyltransferase OS=Erwinia carotovora subsp. atroseptica GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 58/175 (33.14%), Postives = 94/175 (53.71%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPI---GEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+ VD  + +L      V+  GLGARD+LRLEAG+ LYG DM++ ++P+ A + W I  +   +  F+G E ++ Q ++G               R+   V     + +   G ITSG FSP L  +IA+  V +G+   G +  +++R +     +TK  FV
Sbjct:  195 TGEAGYEIALPNEQVVDFWQQLLAVG---VKPCGLGARDTLRLEAGMNLYGQDMDEGISPLAANMGWTIAWQPE-DRQFIGREALVHQREKGTEQLVGLVLTEKGVLRNDLSVRFTDSDGVMREGVITSGSFSPTLGVSIALARVPAGI---GEQAIVQIRNRELPVRVTKPGFV 362          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CELJU (Aminomethyltransferase OS=Cellvibrio japonicus (strain Ueda107) GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 60/175 (34.29%), Postives = 93/175 (53.14%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGY--VKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDGL+I +P+E+A    +A+   +   V   GLGARD+LRLEAG+ LYG++M+++++P+ A + W I  +  A   F+G   +  +   G   + VG         R+   VH    +  G ITSG FSP L  +IA+    V       G + ++E+RGK    ++    FV
Sbjct:  194 TGEDGLEIMLPNEQAGTFWQAL---AAAGVAPCGLGARDTLRLEAGMNLYGHEMDENISPLAANMGWTIAWQPEAR-NFIGRAALTAEKSAGQRHKLVGLVLRERGVLRAEQLVHIANSDERGVITSGTFSPSLGYSIALARVPVTQVPLTPGAQCQVEMRGKLVTVDVVAPGFV 364          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BDEBA (Aminomethyltransferase OS=Bdellovibrio bacteriovorus GN=gcvT PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 57/175 (32.57%), Postives = 89/175 (50.86%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G ++ V +    DL   +LEK +       GLGARD+LR E    LYG++++    P EAGL W I   + A+  F+   +I+ + + G     VGF     G P + +S +       IG++TSG  SP L + I + ++     K GT+  +++RG+     + K PFV
Sbjct:  188 TGEKGCEVFVEAAGTADLWMTLLEKGKDLGCMGIGLGARDTLRTEMKYSLYGHEIDDTTNPYEAGLGWVI---KPAKKDFMNKAQIVGKKEAGLTRNLVGFKMLEKGIPRQGYS-LFSFDNKEIGKVTSGTHSPTLDEPIGIAFIDVAYAKEGTEFLLDIRGRKVKAVVCKTPFV 358          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SERP5 (Aminomethyltransferase OS=Serratia proteamaculans (strain 568) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 63/179 (35.20%), Postives = 93/179 (51.96%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P E+ VD  + +L      V+  GLGARD+LRLEAG+ LYG +M++ V+P+ A + W I      +  F+G E + KQ + G        +   G      P R      DE G    G ITSG FSP L  +IA+  V +G+   G +  +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKEQVVDFWQKLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWLPE-DRQFIGREALEKQREMGTEQLVGLIMTEKGVLRNELPVR----FTDEAGQTHEGIITSGSFSPTLGFSIALARVPAGI---GEQAIVQIRNREMPVKVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PYRFU (Probable aminomethyltransferase OS=Pyrococcus furiosus GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 66/202 (32.67%), Postives = 100/202 (49.50%), Query Frame = -3
Query:  198 TGEDGLKISVPS--------------ERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQ---------HVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 728
            TGE+G ++ +                E+A+ + + ILE+ +   ++  GLGARD+LRLEAG  LYGND ++          VTP++A L +AI      +  F+G + +LKQ ++G   + V F        R   KV+   G  IGE+TSG  SP L   I + +VK    K G +++I++RG          PF   K Y
Sbjct:  196 TGENGFEVYIEDLNPYHPDEEKRGKPEKALHVWERILEEGQKYGIKPAGLGARDTLRLEAGYTLYGNDTKELQLLSTDIDEVTPLQANLEFAI----YWDKDFIGKDALLKQKEKGLGRKLVHFKMLEKSVPREGYKVY-ANGELIGEVTSGTLSPLLNIGIGIAFVKEEYAKPGVEIEIDIRGTRKKAITVTPPFYDPKKY 392          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PYRAB (Probable aminomethyltransferase OS=Pyrococcus abyssi GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 69/205 (33.66%), Postives = 102/205 (49.76%), Query Frame = -3
Query:  198 TGEDGLKISVPS--------------ERAVDLAKAILEKSEGK---VRXTGLGARDSLRLEAGLCLYGNDMEQ---------HVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 728
            TGE+G ++ +                E+A+ + + ILE  EGK   ++  GLGARD+LRLEAG  LYGN+ ++          VTP++A L +AI      +  F+G + +LKQ + G   + V F     G P   + KV+   G  IGE+TSG  SP L   I + +VK    K G ++++E+RG          PF   K Y
Sbjct:  196 TGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILE--EGKKYGIKPAGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAI----YWDKDFIGKDALLKQKERGLGRKLVHFKMVDKGIPREGY-KVY-ANGELIGEVTSGTLSPLLNVGIGIAFVKEEYAKPGIEIEVEIRGARKKAITVTPPFYDPKKY 392          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRATT (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 57/172 (33.14%), Postives = 82/172 (47.67%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+ +      ++LE      +  GLGARD+LRLEAG+ LYG DM+   TP+E GL W++         F+G +    +  +G   + VG            +  D      G ITSG FSP LK  I + YV     K      + +RGK  +  + K  FV
Sbjct:  188 TGEDGFEVILPATQVKKFWDSLLENG---AQPAGLGARDTLRLEAGMHLYGADMDTSTTPLERGLGWSVDLSDE-HRDFIGKKAYFAKKAQGVDTKWVGVVLKTKGVLRAGQEIDFDNGEKGYITSGSFSPTLKVAIGLAYVP----KQADNPVVNIRGKELEVELVKPKFV 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRAT1 (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.429e-16
Identity = 57/172 (33.14%), Postives = 82/172 (47.67%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+ +      ++LE      +  GLGARD+LRLEAG+ LYG DM+   TP+E GL W++         F+G +    +  +G   + VG            +  D      G ITSG FSP LK  I + YV     K      + +RGK  +  + K  FV
Sbjct:  188 TGEDGFEVILPATQVKKFWDSLLENG---AQPAGLGARDTLRLEAGMHLYGADMDTSTTPLERGLGWSVDLSDE-HRDFIGKKAYFAKKAQGVDTKWVGVVLKTKGVLRAGQEIDFDNGEKGYITSGSFSPTLKVAIGLAYVP----KQADNPVVNIRGKELEVELVKPKFV 351          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THEMA (Aminomethyltransferase OS=Thermotoga maritima GN=gcvT PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAV---DLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ + ++ A    D    +L K +G  R  GLGARD  RLEA   LYG DM+++  P E GL+W +    +    F+G E +LK  ++          +G   AR   +V  + G  +GEITSG FSP L K+IA+  V   +        +   GK  +  + K PF
Sbjct:  189 TGEDGFELMLEAKNAPKVWDALMNLLRKIDG--RPAGLGARDVCRLEATYLLYGQDMDENTNPFEVGLSWVV----KLNKDFVGKEALLKAKEKVERKLVALELSGKRIARKGYEVL-KNGERVGEITSGNFSPTLGKSIALALVSKSVKIGDQLGVVFPGGKLVEALVVKKPF 355          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PECCP (Aminomethyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 61/179 (34.08%), Postives = 94/179 (52.51%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPP------VRRVGFFAGGPPARSHSKVHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+E+ VD  + +L      V+  GLGARD+LRLEAG+ LYG DM++ ++P+ A + W I  +   +  F+G E +  Q ++G        +   G      P R      D  G    G ITSG FSP L  +IA+  V  G+   G +  +++R +    ++TK  FV
Sbjct:  195 TGEAGYEIALPNEQVVDFWQQLLAAG---VKPCGLGARDTLRLEAGMNLYGQDMDEGISPLAANMGWTIAWQPE-DRQFIGREALTHQREKGTDQLVGLVLTEKGVLRNDLPVR----FTDSDGVMREGVITSGSFSPTLGVSIALARVPLGI---GEQAIVQIRNRELPVHVTKPGFV 362          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_ERWCT1.094e-1633.14Aminomethyltransferase OS=Erwinia carotovora subsp... [more]
GCST_CELJU1.094e-1634.29Aminomethyltransferase OS=Cellvibrio japonicus (st... [more]
GCST_BDEBA1.094e-1632.57Aminomethyltransferase OS=Bdellovibrio bacteriovor... [more]
GCST_SERP51.429e-1635.20Aminomethyltransferase OS=Serratia proteamaculans ... [more]
GCST_PYRFU1.429e-1632.67Probable aminomethyltransferase OS=Pyrococcus furi... [more]
GCST_PYRAB1.429e-1633.66Probable aminomethyltransferase OS=Pyrococcus abys... [more]
GCST_FRATT1.429e-1633.14Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRAT11.429e-1633.14Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_THEMA1.866e-1634.48Aminomethyltransferase OS=Thermotoga maritima GN=g... [more]
GCST_PECCP1.866e-1634.08Aminomethyltransferase OS=Pectobacterium carotovor... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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