CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEPBP (Aminomethyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 57/163 (34.97%), Postives = 90/163 (55.21%), Query Frame = -3
Query:  249 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 728
            TGEDG +I   +   V L K +LE  K  G V   GLGARD+LRLEA   LYG+++    TPVE+G+ + + ++ +    +LG ++I+     GP  + VG     P   R +  +    G  IG+ TSG  SP  K+++ +  +++   K  T+V +E+RG+
Sbjct:  192 TGEDGFEIYTSNALGVTLWKELLEIGKDFGLV-PVGLGARDTLRLEAKYPLYGHELNAEWTPVESGINFIVKEKSKP---YLGYDRIIADKKNGPKSKVVGVRLLEPGVLRENFPIFAADGKEIGKTTSGTHSPSRKESLGLAILQTEFAKNQTEVFVEIRGQ 350          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEPBA (Aminomethyltransferase OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=gcvT PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.866e-16
Identity = 57/163 (34.97%), Postives = 90/163 (55.21%), Query Frame = -3
Query:  249 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGK 728
            TGEDG +I   +   V L K +LE  K  G V   GLGARD+LRLEA   LYG+++    TPVE+G+ + + ++ +    +LG ++I+     GP  + VG     P   R +  +    G  IG+ TSG  SP  K+++ +  +++   K  T+V +E+RG+
Sbjct:  192 TGEDGFEIYTSNALGVTLWKELLEIGKDFGLV-PVGLGARDTLRLEAKYPLYGHELNAEWTPVESGINFIVKEKSKP---YLGYDRIIADKKNGPKSKVVGVRLLEPGVLRENFPIFAADGKEIGKTTSGTHSPSRKESLGLAILQTEFAKNQTEVFVEIRGQ 350          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SODGM (Aminomethyltransferase OS=Sodalis glossinidius (strain morsitans) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.438e-16
Identity = 63/176 (35.80%), Postives = 93/176 (52.84%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVH--DEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P+ +A D  + +L      V+  GLGARD+LRLEAG+ LYG +M++ ++P+ A + W I  R      F+G E +  Q   G   + VG         R+   VH  D  GN   G ITSG FSP L  +IA+  V +G+   G +  + +R +     +TK  FV
Sbjct:  190 TGEAGYEIALPATQAADFWRQLLAAG---VKPCGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTITWRPEGR-DFIGREALEAQRAAGDGEQLVGLVMTEKGVLRNGLPVHFTDAAGNMQQGIITSGSFSPTLGVSIALARVPAGI---GQQAIVLIRNREMPVKVTKPGFV 358          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_TERTT (Aminomethyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 60/173 (34.68%), Postives = 89/173 (51.45%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I +P+E AV L + +       V   GLGARD+LRLEAG+ LYG++M+   +P+ A + W +     AE  F+G E +  +   G   + VG  + G    R+  +V     + +G ITSG FSP L  +IA+  V  G      +  + VR +  +  I    FV
Sbjct:  191 TGEDGYEIILPAEAAVQLWQDLARIG---VTPCGLGARDTLRLEAGMNLYGHEMDDDTSPLVANMAWTVA-WEPAERNFIGREALTAEKSAGISHKLVGLVYTGKGVLRAEQEVTAPGVDGVGVITSGTFSPTLGYSIALARVPVGF---TDQAVVNVRNRQLEVKIISPCFV 356          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_NATPD (Probable aminomethyltransferase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 58/174 (33.33%), Postives = 86/174 (49.43%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHV---TPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG+++   +  A  +  A+        +  GLGARD+LRLEAG  L GN+ +      TP EA + +A+         F+G++ +  Q + GP  R VG          H       G+ +GE+TSG  SP L   IA+GYV     + GT++ + VRG   D  +  +PF
Sbjct:  193 TGEDGVELLFETAAAETVWSAL------DCQPCGLGARDTLRLEAGFLLGGNEFDPETNPRTPYEANIGFAVDLGTE----FVGSDALAAQREAGPDERLVGLRLQDRGIARHGHDIVAAGDVVGEVTSGTMSPTLGAAIALGYVPVEYTEPGTELAVVVRGDEKDAVVEALPF 356          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_HALHL (Aminomethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 62/173 (35.84%), Postives = 90/173 (52.02%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA-GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ +P+++A  L   +   +E   +  GLGARDSLRLEAGL L G++M++  TP+EA L W +      +  F+G   + +Q   G   R +G    G  PAR    V  + G+  G ITSG  SP L   IA+  V +G   A    ++ +R +       K PFV
Sbjct:  190 TGEDGFELILPADQAPALWDRL---TEAGAQPCGLGARDSLRLEAGLNLNGHEMDEETTPLEAALGWTVAWDPE-DRDFIGRAALEEQRRHGAAWRLIGLLVEGRAPAREGYVVRTDAGD--GVITSGAHSPTLGGPIALARVPAG---AEGDWRVVIRKREAAARRVKPPFV 353          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SACEN (Aminomethyltransferase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=gcvT PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 57/173 (32.95%), Postives = 87/173 (50.29%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++      A  + +A+ +  +E  +R  GL  RD+LRLEAG+ LYGN++   +TP  A L   +  +    G F+G   +    ++    + VG       A  H  +V D  G  IG +TSG  SP L   IAM YV     + GT +++++RG A    +  +PF
Sbjct:  192 TGEDGFELFTSPADAPAVWQALADSGAEHGLRPAGLSCRDTLRLEAGMPLYGNELSAELTPFHANLGRVV--KLDKPGDFVGKAPLAAAAEKPTERKLVGLRTDQRRAPRHGYRVLDAGGAEIGVVTSGAPSPTLGHPIAMAYVDRDHAEPGTALQVDIRGTAVPVEVVALPF 362          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_STRAW (Aminomethyltransferase OS=Streptomyces avermitilis GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 61/176 (34.66%), Postives = 89/176 (50.57%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQ---LDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTK-VKIEVRGKAYDGNITKMPF 728
            TGEDG ++ V    A  L +A+ E  +   +   GL  RD+LRLEAG+ LYG+++   +TP +AGL   +  +   EG F+G E + +     ++ PP   VG  A G             G  IGE+TSG  SP L + IAM YV +     GT  V +++RG      +  +PF
Sbjct:  194 TGEDGFELFVDPADAEKLWQALTEAGAPAGLVPCGLSCRDTLRLEAGMPLYGHELSTSLTPFDAGLGRVV--KFEKEGDFVGREALTEAAALAEKNPPRVLVGLIAEGRRVPRAGYPVVVGGEVIGEVTSGAPSPTLGRPIAMAYVDAAHAAPGTAGVGVDIRGSHEPYEVVALPF 367          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_EXIS2 (Aminomethyltransferase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.430e-16
Identity = 58/171 (33.92%), Postives = 90/171 (52.63%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ +PS  A  +  A+LE     V   GLGARD+LR EA L LYG+++   ++P+EAG+ +A+  + ++   F+G+E ++KQ ++GP  + +G                  G  IG +T+G   P + K IA+  V +      T  +IEVRGK         PF
Sbjct:  192 TGEDGFELYMPSADASAVWNALLEAD---VVPCGLGARDTLRFEACLPLYGHELSATISPIEAGMGFAVKPQVKS---FVGSEVLVKQKEDGPRRQLIGLELTDKGIARQDAPVLVNGETIGFVTTGTLPPTIGKAIALALVPTEYATEET-FEIEVRGKKLAAKRIDTPF 355          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_MYCA1 (Aminomethyltransferase OS=Mycobacterium avium (strain 104) GN=gcvT PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.092e-16
Identity = 58/179 (32.40%), Postives = 90/179 (50.28%), Query Frame = -3
Query:  204 TGEDGLKISVPSERA---VDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 728
            TGE G ++  P E A    D   A + ++ G+    GLGARD+LR E G  L+G+++   ++P++A   WAIG ++ A   F G + +L + + GP     G    G               P+G  TSG FSP L+  IA+  + +    + G KV ++VRG+A    + + PFV  K
Sbjct:  192 TGEHGYELLPPWESAGVVFDALAAAVSQAGGQ--PAGLGARDTLRTEMGYPLHGHELSPDISPLQARCGWAIGWKKEA---FFGRDALLAEKEAGPRRLLRGLRMVGRGVLRAGLTVLVGDTPVGVTTSGTFSPTLQAGIALALIDTDADVRDGQKVTVDVRGRAATCEVVRPPFVAVK 365          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_LEPBP1.866e-1634.97Aminomethyltransferase OS=Leptospira biflexa serov... [more]
GCST_LEPBA1.866e-1634.97Aminomethyltransferase OS=Leptospira biflexa serov... [more]
GCST_SODGM2.438e-1635.80Aminomethyltransferase OS=Sodalis glossinidius (st... [more]
GCST_TERTT3.184e-1634.68Aminomethyltransferase OS=Teredinibacter turnerae ... [more]
GCST_NATPD3.184e-1633.33Probable aminomethyltransferase OS=Natronomonas ph... [more]
GCST_HALHL3.184e-1635.84Aminomethyltransferase OS=Halorhodospira halophila... [more]
GCST_SACEN4.158e-1632.95Aminomethyltransferase OS=Saccharopolyspora erythr... [more]
GCST_STRAW5.430e-1634.66Aminomethyltransferase OS=Streptomyces avermitilis... [more]
GCST_EXIS25.430e-1633.92Aminomethyltransferase OS=Exiguobacterium sibiricu... [more]
GCST_MYCA17.092e-1632.40Aminomethyltransferase OS=Mycobacterium avium (str... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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