CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_MYCLE (Aminomethyltransferase OS=Mycobacterium leprae GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.263e-16
Identity = 56/177 (31.64%), Postives = 90/177 (50.85%), Query Frame = -3
Query:  204 TGEDGLKISVPSERAVDLAKAILEKS-EGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKS-GLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 728
            TGE G ++  P E A  +  A++    + +    GLGARD+LR E G  LYG+++   ++P++A   WAIG ++ A   FLG + +L +   GP     G    G               PIG  TSG FSP L+  +A+  + S    + G ++ ++VRG+A +  + + PF+  K
Sbjct:  192 TGEQGYELLPPWESADVVFDALVAAVVDARGEPAGLGARDTLRTEMGYPLYGHELSLDISPLQARCGWAIGWKKDA---FLGRDALLAEKAAGPRRLLRGLRMAGRGVLRPGLTVCAGDIPIGVTTSGTFSPTLQVGVALALIDSEAAVQDGQQIIVDVRGRAVECEVVRPPFIEVK 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_MYCLB (Aminomethyltransferase OS=Mycobacterium leprae (strain Br4923) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.263e-16
Identity = 56/177 (31.64%), Postives = 90/177 (50.85%), Query Frame = -3
Query:  204 TGEDGLKISVPSERAVDLAKAILEKS-EGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKS-GLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 728
            TGE G ++  P E A  +  A++    + +    GLGARD+LR E G  LYG+++   ++P++A   WAIG ++ A   FLG + +L +   GP     G    G               PIG  TSG FSP L+  +A+  + S    + G ++ ++VRG+A +  + + PF+  K
Sbjct:  192 TGEQGYELLPPWESADVVFDALVAAVVDARGEPAGLGARDTLRTEMGYPLYGHELSLDISPLQARCGWAIGWKKDA---FLGRDALLAEKAAGPRRLLRGLRMAGRGVLRPGLTVCAGDIPIGVTTSGTFSPTLQVGVALALIDSEAAVQDGQQIIVDVRGRAVECEVVRPPFIEVK 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_FRASN (Aminomethyltransferase OS=Frankia sp. (strain EAN1pec) GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.263e-16
Identity = 61/175 (34.86%), Postives = 89/175 (50.86%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXT-GLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG--GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G ++      AV L   +L    G      GLGARD+LR E G  L+G D+   ++PV+A   WA+G  + A   F G E +L +   GP     G  +   G P R H +V    G  +GE+TSG FSP L++ I +  +   +  AG +V ++VRG+     + + PFV
Sbjct:  191 TGEAGFELLPRWADAVPLWDELLTVVTGLGGLPCGLGARDTLRTEMGYPLHGQDLSLSISPVQARSGWAVGWDKPA---FWGREALLAERAAGPARSLWGLRSNDRGIP-RPHMRVSGPDGAELGEVTSGTFSPTLRQGIGLALLDRSV-TAGDEVAVDVRGRVSTMTVVRPPFV 360          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_MYCPA (Aminomethyltransferase OS=Mycobacterium paratuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.580e-15
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = -3
Query:  204 TGEDGLKISVPSERA---VDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 728
            TGE G ++  P E A    D   A + ++ G+    GLGARD+LR E G  L+G+++   ++P++A   WAIG ++ A   F G + +L + + GP     G    G               P+G  TSG FSP L+  IA+  + +    + G +V ++VRG+A    + + PFV  K
Sbjct:  192 TGEHGYELLPPWESAGVVFDALAAAVSQAGGQ--PAGLGARDTLRTEMGYPLHGHELSPDISPLQARCGWAIGWKKEA---FFGRDALLAEKEAGPRRLLRGLRMVGRGVLRAGLTVLVGDTPVGVTTSGTFSPTLQAGIALALINTDADVRDGQEVTVDVRGRAATCEVVRPPFVAVK 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHESH (Aminomethyltransferase OS=Shewanella sediminis (strain HAW-EB3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.695e-15
Identity = 65/185 (35.14%), Postives = 86/185 (46.49%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAI----------GKRRRAEGGFLGAEKILKQLDEGPPVRRVG---FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP + A  L + +LE     V+  GLGARD+LRLEAG+ LYG DM++ V P+ A + W I          G+   A     G EK++  + E   V R G   FF  G                 G ITSG FSP L  +IAM  V   +   G   ++E+R K     +    FV
Sbjct:  190 TGETGYEIIVPEDEAQALWQGLLEAG---VKPCGLGARDTLRLEAGMNLYGLDMDETVNPLAANMGWTIAWEPQDRDFNGREALAAIKAAGTEKLVGLIMEAKGVIRPGMSVFFTDGEGVEQQ-----------GTITSGTFSPTLGYSIAMARVPRSI---GDTAEVEMRKKRVSVKVVAPSFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_HALSA (Probable aminomethyltransferase OS=Halobacterium salinarium GN=gcvT PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 62/177 (35.03%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDM---EQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG--GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G++I  P+    D A A+ +      +  GLGARD+LR+E G  L G D    E   TP EAG+ +A+      E GF+G + +     + P  + VG      G P   ++ V    G+ IG +TSG  SP L + I +GYV S     GT V + +RG      IT  PF+
Sbjct:  196 TGEAGVEIVFPA----DGAGAVWDAIANDCQPCGLGARDTLRMEHGFLLSGQDFDPEENPRTPFEAGIGFAVAP----ESGFVGRDALADT--DSPEQQFVGLTLDERGVPRHGYA-VTTPAGDEIGTVTSGTMSPTLGEPIGLGYVDSAHAADGTTVAVRIRGTDKQATITTPPFL 361          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_HALS3 (Probable aminomethyltransferase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 62/177 (35.03%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDM---EQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG--GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G++I  P+    D A A+ +      +  GLGARD+LR+E G  L G D    E   TP EAG+ +A+      E GF+G + +     + P  + VG      G P   ++ V    G+ IG +TSG  SP L + I +GYV S     GT V + +RG      IT  PF+
Sbjct:  196 TGEAGVEIVFPA----DGAGAVWDAIANDCQPCGLGARDTLRMEHGFLLSGQDFDPEENPRTPFEAGIGFAVAP----ESGFVGRDALADT--DSPEQQFVGLTLDERGVPRHGYA-VTTPAGDEIGTVTSGTMSPTLGEPIGLGYVDSAHAADGTTVAVRIRGTDKQATITTPPFL 361          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PROMH (Aminomethyltransferase OS=Proteus mirabilis (strain HI4320) GN=gcvT PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.004e-15
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = -3
Query:  291 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVH--DEQGN-PIGEITSGGFSPCLKKNIAMGYVKSGL 728
            TGE G +I++P E+AVD  K +L      V+  GLGARD+LRLEAG+ LYG +M++ + P+EA + W I      +  F+G E + K    G   + VG         R+ S VH  D+ G    G ITSG FSP L  +IA+  V +G+
Sbjct:  190 TGEAGYEIAMPKEQAVDYWKKLLAVG---VKPAGLGARDTLRLEAGMDLYGQEMDETINPLEANMGWTIAWLPE-DRQFIGREALEKLRATGTD-KLVGLVMREKGVLRAGSAVHFTDDLGELREGVITSGTFSPTLGFSIALARVPAGI 334          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ACIBL (Aminomethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVD---LAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            T EDG +I +PS+ A       + +    E  V   GLG+R++LRLE  L LYG+++   +   EAGL   +   +  +G F+G   + K  ++G     VG      G P R   KV D +G  IG +TSG + P LK+N+A+ YV          V +E+R +       K   VP+++YK
Sbjct:  201 TAEDGFEIYIPSDAATSDRVWNELLQAGKEFGVVPAGLGSRNTLRLEGKLPLYGHEISDEINVWEAGLDRFL---KMDKGDFIGRAALEKAKNDGVKRALVGLETIERGIP-RDGYKVLDLEGKEIGYVTSGSYMPFLKRNLALAYVPVEQSALDNIVAVEIRNQP-----VKAKVVPSQFYK 374          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEFN (Aminomethyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 62/176 (35.23%), Postives = 87/176 (49.43%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKV---HDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  L +A+L+     V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W +     +E  F+G +  L  +      + VG          H       D  G    G ITSG FSP L  +IAM  V SG+   G   ++E+R K  +  +    FV
Sbjct:  190 TGEAGYEIIVPETEAEALWQALLDAG---VKPCGLGARDTLRLEAGMNLYGQDMDESINPLAANMGWTVA-WEPSERDFIGRD-ALTAIKAAGTDKLVGLVMEEKGVLRHDMAVFFTDADGVEHQGVITSGSFSPTLGYSIAMARVPSGI---GAIAEVEMRKKRVNVKVIAPSFV 357          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_MYCLE9.263e-1631.64Aminomethyltransferase OS=Mycobacterium leprae GN=... [more]
GCST_MYCLB9.263e-1631.64Aminomethyltransferase OS=Mycobacterium leprae (st... [more]
GCST_FRASN9.263e-1634.86Aminomethyltransferase OS=Frankia sp. (strain EAN1... [more]
GCST_MYCPA1.580e-1531.84Aminomethyltransferase OS=Mycobacterium paratuberc... [more]
GCST_SHESH2.695e-1535.14Aminomethyltransferase OS=Shewanella sediminis (st... [more]
GCST_HALSA3.520e-1535.03Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_HALS33.520e-1535.03Probable aminomethyltransferase OS=Halobacterium s... [more]
GCST_PROMH6.004e-1540.00Aminomethyltransferase OS=Proteus mirabilis (strai... [more]
GCST_ACIBL7.841e-1532.79Aminomethyltransferase OS=Acidobacteria bacterium ... [more]
GCST_SHEFN1.024e-1435.23Aminomethyltransferase OS=Shewanella frigidimarina... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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