CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNR3 (Aminomethyltransferase OS=Synechococcus sp. (strain RCC307) GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ + +     L + +LE     V   GLGARDSLRLEA + LYGNDM+ + +P+E GL W +      E  F+G E + +Q  EG   + VG    G     H       G P+G +TSG FSP L+  +A+  V++ L K G ++ +E+RG+     + K PF
Sbjct:  189 TGEDGFELLLTASAGQSLWRQLLEDG---VAPCGLGARDSLRLEAAMHLYGNDMDANTSPLECGLGWLVHLEMPIE--FVGREALERQTAEGVSRKLVGLQLQGRAIARHDYPVLHNGEPVGVVTSGTFSPTLEHPVALASVRADLAKLGNELMVEIRGRQEPAVVVKRPF 354
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PARD8 (Aminomethyltransferase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gcvT PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 71/175 (40.57%), Postives = 94/175 (53.71%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS-KVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TG  G ++       + +  AI E  K EG ++  GLGARD+LRLE G CLYGND++   +P+EAGL W     + AEG  F    ++ +Q  EG   +   F         H  ++ D +GN IG +TSG  SP LKK I MGYVK    KAGT + I+VR K     + K PF
Sbjct:  189 TGAGGFELYFYPSDGMTIWNAIFEAGKPEG-IKPIGLGARDTLRLEMGFCLYGNDLDDTTSPIEAGLGWIT---KFAEGKNFTNRAELERQKKEGVTRKLCAFELQEKGIPRHGYEIADAEGNVIGVVTSGTMSPVLKKGIGMGYVKPEFAKAGTDIFIKVRNKNLKAQVVKAPF 359
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PROA2 (Aminomethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.148e-24
Identity = 69/174 (39.66%), Postives = 98/174 (56.32%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPA-RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G++ISVP++ A  L  A++E  S   ++  GLGARD+LRLE G  LYG+++ +  +P+EA L W     R  +G F+G E  +  +D  P    VGF        R    V++    P+G + SG  SP LK+ I    V  G  K+GT + +EVRGK Y G + K+PFV
Sbjct:  191 TGERGVEISVPNDAATALWVALMEAGSADGIQPIGLGARDTLRLEMGYPLYGHEINRETSPIEARLKWVT---RLDKGNFVGRESCVA-VDINPQRTVVGFMMHERAIPRQGFTVYNRDRKPLGSVCSGTMSPTLKQPIGTADVPRGYMKSGTPLYLEVRGKFYKGEVVKLPFV 360
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_DESHY (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 75/181 (41.44%), Postives = 104/181 (57.46%), Query Frame = -3 
Query:  195 TGEDGLKISVPSERAVDLAKAILEK--SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +I +P E A  + + ILE   SEG V+  GLGARD+LR EA L LYGN++   +TP+EAGL + +   +  +  F+G E +  Q ++G P + VG        ARSH  +  E G  IG ITSG FSP L KNIA+G +     + G  + + +RGKA      K   +P+ +YK
Sbjct:  192 TGEDGFEIYLPPEHAPRMWERILEVGGSEG-VQPIGLGARDTLRFEARLPLYGNELGPDITPLEAGLGFFV---KLEKDNFIGKEALSAQKEKGVPRKLVGLEMIERGIARSHYPLQKE-GKEIGFITSGSFSPTLNKNIALGLIPPEYAQIGETLDVIIRGKA-----VKARIIPSLFYK 362
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_DESHD (Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.418e-24
Identity = 75/181 (41.44%), Postives = 104/181 (57.46%), Query Frame = -3 
Query:  195 TGEDGLKISVPSERAVDLAKAILEK--SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +I +P E A  + + ILE   SEG V+  GLGARD+LR EA L LYGN++   +TP+EAGL + +   +  +  F+G E +  Q ++G P + VG        ARSH  +  E G  IG ITSG FSP L KNIA+G +     + G  + + +RGKA      K   +P+ +YK
Sbjct:  192 TGEDGFEIYLPPEHAPRMWERILEVGGSEG-VQPIGLGARDTLRFEARLPLYGNELGPDITPLEAGLGFFV---KLEKDNFIGKEALSAQKEKGVPRKLVGLEMIERGIARSHYPLQKE-GKEIGFITSGSFSPTLNKNIALGLIPPEYAQIGETLDVIIRGKA-----VKARIIPSLFYK 362
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNY3 (Aminomethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.076e-24
Identity = 69/171 (40.35%), Postives = 90/171 (52.63%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I V  E    L +    K    V   GLGARD+LRLEAG+ LYG DM    TP+EAGL W +     ++G F+G   + +Q   G   R VG          H       G  +G +TSG  SP L+K IA+GYV + L K G ++++EVRGK Y   + K  F
Sbjct:  199 TGEDGFEIMVSPEVGKQLWQTFGSKG---VTPCGLGARDTLRLEAGMGLYGQDMNDETTPLEAGLGWLV--HLDSKGDFIGRAVLTEQKANGVEKRLVGLEMLAKQIARHDYPILHNGEIMGIVTSGTLSPTLQKAIALGYVPTELAKVGQELEVEVRGKTYGIKVVKKLF 364
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PORGI (Aminomethyltransferase OS=Porphyromonas gingivalis GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 70/176 (39.77%), Postives = 99/176 (56.25%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA---GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TG  G ++    + A  +  A+ E  K EG ++  GLGARD+LRLE G CLYGND+    +P+EAGL W    +   +   + + KI+++   G   R++  F     G P R H ++ + +G  IGE+TSG  SPCLKK I MGYV +   K GT++ I VRG+     I K PF
Sbjct:  189 TGAGGFELYFYPQYAQKIWDALFEAGKPEG-IKPAGLGARDTLRLEMGFCLYGNDICDTTSPIEAGLGWIT--KFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIP-RQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PORG3 (Aminomethyltransferase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 70/176 (39.77%), Postives = 99/176 (56.25%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA---GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TG  G ++    + A  +  A+ E  K EG ++  GLGARD+LRLE G CLYGND+    +P+EAGL W    +   +   + + KI+++   G   R++  F     G P R H ++ + +G  IGE+TSG  SPCLKK I MGYV +   K GT++ I VRG+     I K PF
Sbjct:  189 TGAGGFELYFYPQYAQKIWDALFEAGKPEG-IKPAGLGARDTLRLEMGFCLYGNDICDTTSPIEAGLGWIT--KFTDDKMDMPSRKIMEEQKAGGLKRKLVAFELKDKGIP-RQHYEIANAEGQIIGEVTSGTMSPCLKKGIGMGYVATEFSKVGTELGIMVRGRQLKAEIVKPPF 360
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_GEOSW (Aminomethyltransferase OS=Geobacillus sp. (strain WCH70) GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.241e-24
Identity = 69/173 (39.88%), Postives = 98/173 (56.65%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I    E AV L ++ILE  K EG V   GLGARD+LR EA L LYG ++ + +TP+EAGL +A+   + A+  F+G + + KQ +EG   + VG          H       G  IG +T+G  SP LKKNI +  +K+   +  T+V++E+RGK     +   PF
Sbjct:  190 TGEDGFEIYCRREDAVALWESILEAGKEEG-VLPCGLGARDTLRFEATLPLYGQELSKDITPIEAGLGFAVKTNKDAD--FIGKDVLKKQKEEGTARKLVGIEMIDKGIPRHGYKVFANGEEIGFVTTGTQSPTLKKNIGLALIKTEFTEMDTEVEVEIRGKRLKAKVIATPF 359
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACTN (Aminomethyltransferase OS=Bacteroides thetaiotaomicron GN=gcvT PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 69/175 (39.43%), Postives = 95/175 (54.29%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEG-KVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TG  G ++    + A  + KA+ E  E   ++  GLGARD+LRLE G CLYGND++   +P+EAGL W     +  EG  F+    + KQ  EG   + VGF     G P   +  V +E+G  IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  189 TGAGGFELYFYPDAAEAIWKAVFEAGEEFGIKPVGLGARDTLRLEMGFCLYGNDLDDKTSPIEAGLGWI---TKFVEGKEFINRPMLEKQKSEGTTRKLVGFEMIDRGIPRHGYELV-NEEGEGIGVVTSGTMSPTRKIGIGMGYVKPEYAKVGTEICIDMRGRKLKAIVVKPPF 359
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SYNR33.176e-2437.43Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_PARD83.176e-2440.57Aminomethyltransferase OS=Parabacteroides distason... [more]
GCST_PROA24.148e-2439.66Aminomethyltransferase OS=Prosthecochloris aestuar... [more]
GCST_DESHY5.418e-2441.44Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_DESHD5.418e-2441.44Aminomethyltransferase OS=Desulfitobacterium hafni... [more]
GCST_SYNY37.076e-2440.35Aminomethyltransferase OS=Synechocystis sp. (strai... [more]
GCST_PORGI9.241e-2439.77Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_PORG39.241e-2439.77Aminomethyltransferase OS=Porphyromonas gingivalis... [more]
GCST_GEOSW9.241e-2439.88Aminomethyltransferase OS=Geobacillus sp. (strain ... [more]
GCST_BACTN1.207e-2339.43Aminomethyltransferase OS=Bacteroides thetaiotaomi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
back to top