CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEDO (Aminomethyltransferase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.024e-14
Identity = 65/182 (35.71%), Postives = 91/182 (50.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWA----------IGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP + A DL +A+L      V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W           IG+    E    G EK++  + E   V R       P   + S   ++Q    G ITSG FSP L  +IAM  V +G+   G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPEQDAEDLWQALLNTG---VKPCGLGARDTLRLEAGMNLYGLDMDESINPLAANMGWTIAWEPSDRDFIGRAALTELKAQGTEKLVGLVMEEKGVLRHDM----PVFFTDSDGVEQQ----GYITSGTFSPTLGYSIAMARVPAGI---GAIAEVEMRKKRVAVKVIAPSFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHELP (Aminomethyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 63/182 (34.62%), Postives = 90/182 (49.45%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWA----------IGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  L +A+L+     V+  GLGARD+LRLEAG+ LYG DM++ V P+ A + W           IG+   A     G +K++  + E   V R G     P   + +   ++Q    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPEAEAEALWQALLDNG---VKPCGLGARDTLRLEAGMNLYGQDMDESVNPLAANMGWTIAWEPEDRDFIGREALAAIKAAGTDKLVGLVMEAKGVLRTGM----PVFFTDADGVEQQ----GAITSGTFSPTLGYSIAMARVPNSV---GDVAEVEMRKKRVPVKVIAPSFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SACD2 (Aminomethyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 60/173 (34.68%), Postives = 85/173 (49.13%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I +P+  A    +A++      V   GLGARD+LRLEAG+ LYG++M+ + +P+ A + W I  +   E  F+G E I  +   G   + VG         R+   V  E     G ITSG FSP L K++A+  V        T   + VR K     + K  FV
Sbjct:  191 TGEDGYEIMLPTSDADAFWRALMAVG---VAPCGLGARDTLRLEAGMNLYGHEMDDNTSPLVANMAWTIAWQPE-ERNFIGREAISAEKAAGVTHKLVGLVLQDRGVLRAEQVVTCEGVEGEGVITSGTFSPTLSKSVALARVPVAFSGECT---VAVRNKQLKALVVKPSFV 356          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_MYCUA (Aminomethyltransferase OS=Mycobacterium ulcerans (strain Agy99) GN=gcvT PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 57/179 (31.84%), Postives = 88/179 (49.16%), Query Frame = -3
Query:  204 TGEDGLKISVPSERA---VDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLH-KAGTKVKIEVRGKAYDGNITKMPFVPTK 728
            TGE G ++  P E A    D   A + +  G     GLGARD+LR E G  L+G+++   ++P++A   WAIG ++ A   F G E +L +   GP     G    G               P+G  TSG FSP L+  IA+  + +    + G ++ ++VRG+A +  + + PFV  K
Sbjct:  192 TGEHGYELLPPWESAGVVFDALAAAVAEVGGS--PAGLGARDTLRTEMGYPLHGHELSLDISPLQARCGWAIGWKKDA---FFGREALLAEKAAGPRRLPRGLRMVGRGVLRPGLTVLNGSTPVGVTTSGTFSPTLQIGIALALIDTDAGVEDGQQITVDVRGRAVECEVVRPPFVEAK 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERPY (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPTGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERPS (Aminomethyltransferase OS=Yersinia pseudotuberculosis GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERPP (Aminomethyltransferase OS=Yersinia pestis (strain Pestoides F) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERPN (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERPG (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERPE (Aminomethyltransferase OS=Yersinia pestis GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SHEDO1.024e-1435.71Aminomethyltransferase OS=Shewanella denitrificans... [more]
GCST_SHELP1.338e-1434.62Aminomethyltransferase OS=Shewanella loihica (stra... [more]
GCST_SACD21.338e-1434.68Aminomethyltransferase OS=Saccharophagus degradans... [more]
GCST_MYCUA1.338e-1431.84Aminomethyltransferase OS=Mycobacterium ulcerans (... [more]
GCST_YERPY1.747e-1432.00Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPS1.747e-1432.00Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPP1.747e-1432.00Aminomethyltransferase OS=Yersinia pestis (strain ... [more]
GCST_YERPN1.747e-1432.00Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPG1.747e-1432.00Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERPE1.747e-1432.00Aminomethyltransferase OS=Yersinia pestis GN=gcvT ... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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