CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERPB (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERPA (Aminomethyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_YERP3 (Aminomethyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVH--DEQGNP-IGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I++P ++ V   + +L      V+  GLGARD+LRLEAG+ LYG +M++  +P+ A + W +  +   +  F+G   + +Q  +G               R+   V+  D  GN  +G ITSG FSP L  +IA+  V +G+   G    +++R +     +TK  FV
Sbjct:  190 TGEAGYEIALPKQQVVAFWQQLLAAG---VKPAGLGARDTLRLEAGMNLYGQEMDEKTSPLAANMGWTVAWQPE-DRQFIGRAALERQRMKGTEQLVGLIMTEKGVLRNELPVYFFDAAGNQHVGVITSGSFSPTLGFSIALARVPAGI---GEHAVVQIRNREMPVRVTKPGFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_DEIDV (Aminomethyltransferase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 55/171 (32.16%), Postives = 85/171 (49.71%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ + +  A  +   ++      V   GLGARD+LRLEAG  LYG++    + P+ +  TW +      +  F G E + +   +    + +G      P R    V  + G  +G +TSG  SP L   IA+  V++G   A T  ++EVRGKA+    T +PF
Sbjct:  197 TGEDGFEVFIDASEAETVWDKLMAIG---VTPAGLGARDTLRLEAGFPLYGHEFADDIHPLSSHYTWVV-----KDKPFYGREALQQPAQQ----KLIGLKLDKVPVREGYPVL-QSGQVVGHVTSGTSSPTLGHPIALALVQAGAADA-TDFEVEVRGKAHPATRTDVPF 353          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEPA (Aminomethyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 62/176 (35.23%), Postives = 86/176 (48.86%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G ++ VP++ A  L +A L+     ++  GLGARD+LRLEAG+ LYG DM++ V P+ A + W +     AE  F G + + K   EG   + VG          H       D  G    G ITSG FSP L  +IAM  V   +   G   ++E+R K     +    FV
Sbjct:  190 TGETGYEVIVPNDEAEALWQAFLDAG---IKPCGLGARDTLRLEAGMNLYGLDMDESVNPLAANMGWTVA-WEPAERDFNGRQALEKIKAEGTD-KLVGLIMDAKGVIRHGMSVFFTDSDGVEQQGTITSGTFSPTLGYSIAMARVPRSI---GDVAEVEMRKKRVPVKVIAPSFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEON (Aminomethyltransferase OS=Shewanella oneidensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 63/176 (35.80%), Postives = 87/176 (49.43%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  L +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I      +  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V S +   G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPETEAEALWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPTDRDFIG-RKALEALRDAGTDKLVGLVMEEKGVLRHDMPVFFTDAAGVEQQGVITSGTFSPTLGYSIAMARVPSSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEWM (Aminomethyltransferase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 67/185 (36.22%), Postives = 88/185 (47.57%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAI----------GKRRRAEGGFLGAEKILKQLDEGPPVRRVG---FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  L  A+LE     V+  GLGARD+LRLEAG+ LYG DM++ V P+ A + W I          G+   A     G EK++  + E   V R G   FF       S S   ++QG     ITSG FSP L  +IAM  V   +       ++E+R K     +    FV
Sbjct:  190 TGETGYEIIVPDSEAEALWLALLEAG---VKPCGLGARDTLRLEAGMNLYGLDMDESVNPLAANMGWTIAWEPADRNFNGREALAAIKAAGTEKMVGLIMEAKGVIRPGMSVFF-------SDSDGVEQQGT----ITSGTFSPTLGYSIAMARVPRSI---ADTAEVEMRKKRVPVKVIAPSFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEB9 (Aminomethyltransferase OS=Shewanella baltica (strain OS195) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 61/176 (34.66%), Postives = 89/176 (50.57%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP + A  + +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I     ++  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPEDEAQAMWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPSDRDFIG-RKALETLRDAGTDKLVGLVMEEKGVLRHDMPVFFTDSAGVEHQGVITSGTFSPTLGYSIAMARVPNSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEB8 (Aminomethyltransferase OS=Shewanella baltica (strain OS185) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 61/176 (34.66%), Postives = 89/176 (50.57%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP + A  + +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I     ++  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPEDEAQAMWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPSDRDFIG-RKALETLRDAGTDKLVGLVMEEKGVLRHDMPVFFTDSAGVEHQGVITSGTFSPTLGYSIAMARVPNSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEB2 (Aminomethyltransferase OS=Shewanella baltica (strain OS223) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 61/176 (34.66%), Postives = 89/176 (50.57%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP + A  + +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I     ++  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPEDEAQAMWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPSDRDFIG-RKALETLRDAGTDKLVGLVMEEKGVLRHDMPVFFTDSAGVEHQGVITSGTFSPTLGYSIAMARVPNSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_YERPB1.747e-1432.00Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_YERPA1.747e-1432.00Aminomethyltransferase OS=Yersinia pestis bv. Anti... [more]
GCST_YERP31.747e-1432.00Aminomethyltransferase OS=Yersinia pseudotuberculo... [more]
GCST_DEIDV1.747e-1432.16Aminomethyltransferase OS=Deinococcus deserti (str... [more]
GCST_SHEPA2.282e-1435.23Aminomethyltransferase OS=Shewanella pealeana (str... [more]
GCST_SHEON5.083e-1435.80Aminomethyltransferase OS=Shewanella oneidensis GN... [more]
GCST_SHEWM6.638e-1436.22Aminomethyltransferase OS=Shewanella woodyi (strai... [more]
GCST_SHEB96.638e-1434.66Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHEB86.638e-1434.66Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHEB26.638e-1434.66Aminomethyltransferase OS=Shewanella baltica (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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