CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEAM (Aminomethyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.638e-14
Identity = 63/176 (35.80%), Postives = 86/176 (48.86%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHS-KVHDEQGNPI---GEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  L +A+L+     V+  GLGARD+LRLEAG+ LYG DM++ V P+ A + W I     A+  F+G E  L+ +      + VG          H   V     N +   G ITSG FSP L  +IAM  V   +   G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPEAEAEALWQALLDAG---VQPCGLGARDTLRLEAGMNLYGQDMDESVNPLAANMGWTIA-WEPADRDFIGRE-ALEAIKAKGSDKLVGLVMEEKGVLRHDMPVFFTDANGVEHQGVITSGTFSPTLGYSIAMARVPGAI---GETAEVEMRKKRVTVRVIAPSFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHESW (Aminomethyltransferase OS=Shewanella sp. (strain W3-18-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP + A  L +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I      +  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V    ++ G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPEDEAQALWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPTDRDFIG-RKALEALRDAGTDKLVGLVMEEKGVLRHDMPVFFTDAAGVEHQGVITSGTFSPTLGYSIAMARVP---NQIGDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEPC (Aminomethyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP + A  L +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I      +  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V    ++ G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPEDEAQALWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPTDRDFIG-RKALEALRDAGTDKLVGLVMEEKGVLRHDMPVFFTDAAGVEHQGVITSGTFSPTLGYSIAMARVP---NQIGDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEB5 (Aminomethyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gcvT PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 61/176 (34.66%), Postives = 88/176 (50.00%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  + +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I     ++  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGEAGYEIIVPENEAEAMWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPSDRDFIG-RKALETLRDAGTDKLVGLVMEEKGVLRHDMPVFFTDSAGVEHQGVITSGTFSPTLGYSIAMARVPNSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHESR (Aminomethyltransferase OS=Shewanella sp. (strain MR-7) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 62/176 (35.23%), Postives = 87/176 (49.43%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  L +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I      +  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGEVGYEIIVPETEAEALWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPTDRDFIG-RKALEALRDAGTDKLVGLVMEEKGVLRHDMPVFFTDAAGVEQQGVITSGTFSPTLGYSIAMARVPNSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHESM (Aminomethyltransferase OS=Shewanella sp. (strain MR-4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 62/176 (35.23%), Postives = 87/176 (49.43%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  L +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I      +  F+G  K L+ L +    + VG          H       D  G    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGEVGYEIIVPETEAEALWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPTDRDFIG-RKALEALRDAGTDKLVGLVMEEKGVLRHDMPVFFTDAAGVEQQGVITSGTFSPTLGYSIAMARVPNSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHEHH (Aminomethyltransferase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 62/176 (35.23%), Postives = 84/176 (47.73%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G ++ VP   A  L +A LE     ++  GLGARD+LRLEAG+ LYG DM++ V P+ A + W +     A+  F G + + K   EG   + VG          H       D  G    G ITSG FSP L  +IAM  V   +   G   ++E+R K     +    FV
Sbjct:  190 TGETGYEVIVPEADAEALWQAFLEAG---IKPCGLGARDTLRLEAGMNLYGLDMDESVNPLAANMGWTVA-WEPADRDFNGRQALEKIKAEGTD-KLVGLIMDAKGVIRHGMSVFFTDSDGVEQQGIITSGTFSPTLGYSIAMARVPRSI---GDVAEVEMRKKRVPVKVIAPSFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_HALMA (Probable aminomethyltransferase OS=Haloarcula marismortui GN=gcvT PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 56/177 (31.64%), Postives = 84/177 (47.46%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGND---MEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I  P + A  +  A+      + +  GLGARD+LRLE G  L G +   +++  TP EAG+ W +    + +  F+  + +     +GP  + +G      G P   +  V    G PIG ITSG  SP L   IA+ YV S   +    V++ VRG+         PF+
Sbjct:  196 TGEPGFEILCPPDDAGVVWDAL------ECQPCGLGARDTLRLEMGFLLSGQEFHPVDEPRTPYEAGIGWTV----KLDTEFVARDALEGVAADGPEEKLIGIELVDRGVPRHGYD-VTTPDGEPIGHITSGTMSPTLGAPIALAYVPSAYAEPDKSVRVVVRGEPKKARTRSTPFL 361          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SHESA (Aminomethyltransferase OS=Shewanella sp. (strain ANA-3) GN=gcvT PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 61/176 (34.66%), Postives = 86/176 (48.86%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSK---VHDEQG-NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G +I VP   A  L +A+L++    V+  GLGARD+LRLEAG+ LYG DM++ + P+ A + W I      +  F+G + +    D G   + VG          H       D  G    G ITSG FSP L  +IAM  V + +   G   ++E+R K     +    FV
Sbjct:  190 TGEVGYEIIVPETEAEALWQALLDQG---VKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIA-WEPTDRDFIGRQALEALRDAGTD-KLVGLVMEEKGVLRHDMPVFFTDAAGVEQQGVITSGTFSPTLGYSIAMARVPNSI---GDTAEVEMRKKRVAVRVVAPNFV 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_AERPE (Probable aminomethyltransferase OS=Aeropyrum pernix GN=gcvT PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 54/180 (30.00%), Postives = 85/180 (47.22%), Query Frame = -3
Query:  210 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVT--PVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-----FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 728
            TGEDG +I    E A  + KA +E      +  G+ ARD+LR+EAG  L G++  +     P    L + +G     + GF+G   +     EG    RVG      +A   P   +    D+    +G +TSG FSP + + +A  Y+ S     G  ++++VRGK  +  + + P VP
Sbjct:  196 TGEDGFEIIAEVEAAKRIFKAAVEAG---AKPAGIAARDTLRIEAGFVLGGHEYGEDPLRWPCAVSLRYGLGAIDWGKKGFVGEAALRACRREGVRWIRVGLVMKKKYARMIPRSGYRLYVDDVD--VGWVTSGTFSPVIGRGVAQAYIDSRYAYIGDTIEVDVRGKRGEARLQEFPLVP 370          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SHEAM6.638e-1435.80Aminomethyltransferase OS=Shewanella amazonensis (... [more]
GCST_SHESW1.132e-1335.23Aminomethyltransferase OS=Shewanella sp. (strain W... [more]
GCST_SHEPC1.132e-1335.23Aminomethyltransferase OS=Shewanella putrefaciens ... [more]
GCST_SHEB51.132e-1334.66Aminomethyltransferase OS=Shewanella baltica (stra... [more]
GCST_SHESR1.479e-1335.23Aminomethyltransferase OS=Shewanella sp. (strain M... [more]
GCST_SHESM1.479e-1335.23Aminomethyltransferase OS=Shewanella sp. (strain M... [more]
GCST_SHEHH1.931e-1335.23Aminomethyltransferase OS=Shewanella halifaxensis ... [more]
GCST_HALMA1.931e-1331.64Probable aminomethyltransferase OS=Haloarcula mari... [more]
GCST_SHESA3.295e-1334.66Aminomethyltransferase OS=Shewanella sp. (strain A... [more]
GCST_AERPE4.303e-1330.00Probable aminomethyltransferase OS=Aeropyrum perni... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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