CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNPX (Aminomethyltransferase OS=Synechococcus sp. (strain WH8102) GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 63/171 (36.84%), Postives = 92/171 (53.80%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ + +     L + +L++    V   GLGARD+LRLEA + LYG DM    TP EAGL W +      +  F+G + + +  + GP  R VG    G     H       G  +G +TSG +SP L++ IA+ YV + L K G ++ +E+RGKA    + K PF
Sbjct:  198 TGEDGAELLLTAADGQKLWQILLDRG---VSPCGLGARDTLRLEAAMHLYGMDMNAETTPFEAGLGWLVHLEMPVD--FVGRQALEQAAESGPTKRLVGLKLQGRAIARHDYPVLHNGETVGVVTSGTWSPTLEEPIALAYVPTALAKLGAELSVEIRGKAQPACVVKRPF 363          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_COXBU (Aminomethyltransferase OS=Coxiella burnetii GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 76/174 (43.68%), Postives = 96/174 (55.17%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPP-ARSHSKVH-DEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDGL+I VP+ RA DL    + +    V+  GLGARD+LRLEAGL LYG DM++  +P+ + L+W +     A+  F+G   + KQLDE    R +G     P   R+H KV   E G   G ITSGGFSP L   IA+  V  G      K  +E RGK     I K PFV
Sbjct:  192 TGEDGLEIIVPASRATDLWARFVHQG---VKPCGLGARDTLRLEAGLNLYGTDMDETTSPLISNLSWTV-SWNDADRNFIGRRALEKQLDENVKERLIGLVMEEPGILRNHQKVWLTEDGE--GIITSGGFSPTLGHAIALARVPVG---EVEKATVERRGKKIPVKIIKPPFV 356          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CHLTE (Aminomethyltransferase OS=Chlorobium tepidum GN=gcvT PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 67/175 (38.29%), Postives = 104/175 (59.43%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G++I +P+ERAV L  A++E  KS+G ++  GLGARD+LRLE G  LYG+++E+ V P+EA L W +   +  +  F+G ++  +Q++  P    VGF   G    R H KV++     IGE+ SG  SP L++ I    +     + GT + +E+RG    G + ++PFV
Sbjct:  191 TGEAGVEICLPNERAVALWSALMEAGKSDG-IQPIGLGARDTLRLEMGYSLYGHEIERDVNPLEARLKWVV---KLNKPNFIG-KQACEQVEINPRKSVVGFSLEGRAIPRQHFKVYNSDKQEIGEVCSGTVSPTLQEPIGTASLLLDYAQPGTPIFVEIRGTMQPGAVRRLPFV 360          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEPIN (Aminomethyltransferase OS=Leptospira interrogans GN=gcvT PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 71/178 (39.89%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  210 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 728
            TGEDG +I       + L   +LE  K  G +   GLGARD+LR+EA   LYG+++    TP+E+G+ W + ++   E  +  +EKIL Q   G P + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  ++S   K G  ++IE+R +     IT  PF+P
Sbjct:  194 TGEDGFEIYSSIPIGLKLWNELLEFGKPYGLL-PCGLGARDTLRIEAKYPLYGHELNDQWTPIESGIGWIVKEK---ENPYFSSEKILFQKKNGVPSKIVSFALTEAGVP--RENFRVLDSQGNEIGKTTSGTFSPSLKKGIGLALIQSEKIKDGEPIQIEIREQPKQAIITMKPFIP 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEPIC (Aminomethyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gcvT PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 71/178 (39.89%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  210 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 728
            TGEDG +I       + L   +LE  K  G +   GLGARD+LR+EA   LYG+++    TP+E+G+ W + ++   E  +  +EKIL Q   G P + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  ++S   K G  ++IE+R +     IT  PF+P
Sbjct:  194 TGEDGFEIYSSIPIGLKLWNELLEFGKPYGLL-PCGLGARDTLRIEAKYPLYGHELNDQWTPIESGIGWIVKEK---ENPYFSSEKILFQKKNGVPSKIVSFALTEAGVP--RENFRVLDSQGNEIGKTTSGTFSPSLKKGIGLALIQSEKIKDGEPIQIEIREQPKQAIITMKPFIP 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEGPL (Aminomethyltransferase OS=Legionella pneumophila (strain Lens) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 66/172 (38.37%), Postives = 96/172 (55.81%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDGL+I VP+E    L   +L      V   GLGARD+LRLEAG+ LYG DM++  TP+E+GLTW + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  190 TGEDGLEIIVPNEFVTQLWNDLLNAG---VTPCGLGARDTLRLEAGMLLYGQDMDETTTPLESGLTWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_ANOFW (Aminomethyltransferase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 68/173 (39.31%), Postives = 94/173 (54.34%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++   +E A  L +AILE  K EG V   GLGARD+LR EA L LYG ++ + +TP+EAGL +A+   +  +  F G E + KQ +EG P R VG          H          IG +T+G  SP LKKNI +  + +      T+V+++VRGK     +   PF
Sbjct:  190 TGEDGFELYCRAEDAPTLWRAILEAGKEEG-VLPCGLGARDTLRFEACLPLYGQELAKDITPIEAGLGFAVKTNKDVD--FFGKEILKKQKEEGAPRRLVGIEMIDKGIARHGYAVYVNNEQIGFVTTGTQSPTLKKNIGLALISTAFSSLDTEVEVDVRGKRLKARVVATPF 359          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNS3 (Aminomethyltransferase OS=Synechococcus sp. (strain CC9311) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 62/171 (36.26%), Postives = 94/171 (54.97%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG+++ + ++    L + +LE+    V   GLGARD+LRLEA + LYG DM+   TP EAGL W +     A   F+G + + +  ++GP  R VG    G     H       G  +G +TSG +SP L++ IA+  +   L K GT++ +E+RG+     + K PF
Sbjct:  200 TGEDGVELLLKADDGRQLWQLLLEEG---VTPCGLGARDTLRLEAAMHLYGQDMDAATTPFEAGLGWLVHLEMPAL--FIGRQALEQAAEQGPSKRLVGLKLQGRSIARHDYPVIHNGATVGVVTSGSWSPTLQEPIALASLPPALAKLGTELSVEIRGQLQPATVVKRPF 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNP2 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.512e-23
Identity = 66/171 (38.60%), Postives = 87/171 (50.88%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ V       L  A+++     V   GLGARD+LRLEAGL LYG DM+   TP+EAGL W I    + +  F+  + +  Q   G   R VG    G     H       G  +G +TSG  SP L+K IA+ Y+     K G  V +E+RGK Y   + K PF
Sbjct:  192 TGEDGFEVMVAPTAGKKLWSALIDAG---VMPCGLGARDTLRLEAGLHLYGQDMDDDTTPLEAGLGWLI--HWQEKDAFIAKDILQTQKAAGVQRRLVGLEMQGRGIARHDYSVLVNGEAVGLVTSGTMSPTLEKAIALAYLPLEFSKVGQAVTVEIRGKQYPAQVVKKPF 357          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_RALME (Aminomethyltransferase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 68/178 (38.20%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG------GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ VP+E    + + +   S   VR  GLGARD+LRLEAG+ LYG DM+ H +P++AGL+W +    ++E  F+G   +L    +         FAG      G   R+H KV    G+  GEITSG FSP L ++IA   +   +   GT+V++E+R +     + K+PFV
Sbjct:  205 TGEDGFELVVPAENVAGIWEKL---SASGVRPAGLGARDTLRLEAGMNLYGQDMDIHTSPLDAGLSWTVD--LQSERDFIGKSALLASGQQKT-------FAGLILRDKGGVLRAHQKVITPAGD--GEITSGTFSPSLSQSIAFARLPRDI-APGTEVQVEIRDRKLTATVVKLPFV 367          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_SYNPX1.576e-2336.84Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_COXBU1.576e-2343.68Aminomethyltransferase OS=Coxiella burnetii GN=gcv... [more]
GCST_CHLTE2.059e-2338.29Aminomethyltransferase OS=Chlorobium tepidum GN=gc... [more]
GCST_LEPIN2.689e-2339.89Aminomethyltransferase OS=Leptospira interrogans G... [more]
GCST_LEPIC2.689e-2339.89Aminomethyltransferase OS=Leptospira interrogans s... [more]
GCST_LEGPL2.689e-2338.37Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_ANOFW2.689e-2339.31Aminomethyltransferase OS=Anoxybacillus flavitherm... [more]
GCST_SYNS33.512e-2336.26Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNP23.512e-2338.60Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_RALME5.990e-2338.20Aminomethyltransferase OS=Ralstonia metallidurans ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
back to top