CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEGPH (Aminomethyltransferase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gcvT PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.823e-23
Identity = 65/172 (37.79%), Postives = 95/172 (55.23%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDGL+I VP+E    L   +L      V   GLGARD+LRLEAG+ LYG DM++  TP+E+GL W + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  190 TGEDGLEIIVPNEFVTQLWNDLLHAG---VTPCGLGARDTLRLEAGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPM---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THISH (Aminomethyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 73/173 (42.20%), Postives = 97/173 (56.07%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I +P+  A      +  K  G V+  GLGARD+LRLEAG+ LYG DM++ V+P+E+GL W +     AE  F+G   + KQ   G   R VG    G    R H +V        GEITSGGFSP L  +IA+  V +G    G +V+++VRGK     + K PFV
Sbjct:  190 TGEDGFEIMLPAAEAPAFWDRL--KVAG-VQPAGLGARDTLRLEAGMNLYGQDMDEQVSPLESGLAWTVA-FEPAERDFVGRAALEKQKAAGGLRRFVGLVLEGRGVLRGHMRVLCGAAGE-GEITSGGFSPTLGVSIALARVPAG---TGERVEVDVRGKPQPARLVKPPFV 354          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_NITEU (Aminomethyltransferase OS=Nitrosomonas europaea GN=gcvT PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 71/177 (40.11%), Postives = 100/177 (56.50%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRR--VGF-FAGGPPARSHSKVHDEQGNPI--GEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I++P+ +A D  + +       V   GLGARD+LRLEAG+ LYG DM++ V P+E+GL W +    ++E  F G + +L+      PV R  VG         R+H KV   Q      GEITSGGFSP L ++IA+  + +G+  AG +V + VR K     + K PFV
Sbjct:  191 TGEDGFEITLPAGQAADFWQKL---HAAGVAPAGLGARDTLRLEAGMNLYGQDMDETVNPLESGLAWTVD--LKSERDFTGKQTLLE-----TPVNRQLVGLVLLDKGVLRNHQKVITRQEGEAGEGEITSGGFSPTLNQSIALARIPAGI-AAGEQVHVVVRDKQLAAKVVKYPFV 356          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYMTH (Aminomethyltransferase OS=Symbiobacterium thermophilum GN=gcvT PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 63/174 (36.21%), Postives = 101/174 (58.05%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I V +E    L +A+LE  + + +   GLGARD+LR EA L LYG+++     P+EAGL +A+  ++  +  F+G + + +  ++GP  + VG      G P + +       G  +GE+T+G FSP L+KNIA+ YV       GT+V++ +RG+A    + + PF
Sbjct:  199 TGEDGFEIYVKAEDVAALWEALLEAGDEQGLLPCGLGARDTLRFEAKLPLYGHEISDQHNPLEAGLGFAVKLKKGVD--FIGRDALARIKEQGPTRKLVGIEMIDRGVPRQGYPVAVG--GEVVGEVTTGSFSPTLEKNIALAYVPVAHSAVGTEVEVIIRGRALKARVVETPF 368          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEGPC (Aminomethyltransferase OS=Legionella pneumophila (strain Corby) GN=gcvT PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 65/172 (37.79%), Postives = 95/172 (55.23%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDGL+I VP+E    L   +L      V   GLGARD+LRLEAG+ LYG DM++  TP+E+GL W + K    + GF+G   ++ Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  190 TGEDGLEIIVPNEFITQLWNDLLNAG---VTPCGLGARDTLRLEAGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALVSQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEGPA (Aminomethyltransferase OS=Legionella pneumophila (strain Paris) GN=gcvT PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 65/172 (37.79%), Postives = 94/172 (54.65%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDGL+I VP+E    L   +L      V   GLGARD+LRLEAG+ LYG DM++  TP+E+GL W + K    + GF+G   +  Q  +G   + VG          H +    +G P G ITSG +SP L+++IA+  V     + G +V +++RGK     + K  F+
Sbjct:  190 TGEDGLEIIVPNEFVTQLWNDLLNAG---VTPCGLGARDTLRLEAGMLLYGQDMDETTTPLESGLAWTV-KWEPEDRGFIGMGALASQKQQGIKRKMVGLTLLDKGIMRHGQKVIIEGCPDGIITSGSYSPTLQQSIALARVPV---ETGEQVLVDIRGKLIPAKVGKPRFI 354          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURP8 (Aminomethyltransferase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=gcvT PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.743e-22
Identity = 72/176 (40.91%), Postives = 102/176 (57.95%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I VP+     L  A+  +++G VR  GLGARD+LRLEAG+ LYG DM+  V+P++AGL W +      E  F+G  K+     KQ   G  + +    A G   R+H KV    G   GEITSG FSP ++++IA   V  G+ + G  V +++R KA   ++ K+PFV
Sbjct:  198 TGEDGFEIIVPAAHVEALWNAL--QAQG-VRPAGLGARDTLRLEAGMNLYGQDMDDDVSPLDAGLAWTVDLSAPRE--FIGRAKLEADGSKQSFVGLILHKDNGKAAG-VLRAHQKVVTPNGE--GEITSGTFSPTMQESIAFARVPKGV-QPGDVVHVQIRDKALPASVVKLPFV 364          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PROMA (Aminomethyltransferase OS=Prochlorococcus marinus GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 64/171 (37.43%), Postives = 90/171 (52.63%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I + +     L + ++E     V   GLGARD+LRLEAG+ LYGND+    TP EAGL W +      E  F+G   ++KQ +EG   + V     G            +   +GEITSG +SP L + IA+ Y+   L K GT V +++R K +   + K PF
Sbjct:  203 TGEDGYEILLNTNAGKSLWRELIENG---VTPCGLGARDTLRLEAGMPLYGNDINNTTTPFEAGLGWLVHLETPDE--FIGKAALVKQTNEGINKKLVALKIEGRAIARKGYQIMFKNKFVGEITSGSWSPTLNEGIALAYLPIDLTKIGTAVSVQIRDKLHTAIVAKKPF 368          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_OCEIH (Aminomethyltransferase OS=Oceanobacillus iheyensis GN=gcvT PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 66/181 (36.46%), Postives = 99/181 (54.70%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVG--FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG +I + +   V L K +LEK E   +   GLGARD+LR EA L LYG ++ + ++P+EAGL +A+   +  +  F+G E +  Q++ G   + VG      G P   +  + D +   IG ITSG  SP L KN+ +  +     + GT+V ++VR +     I K   VPT +YK
Sbjct:  197 TGEDGFEIYIDASSGVALWKLLLEKGEANGLEPIGLGARDTLRFEANLALYGQELSKDISPIEAGLGFAVKVNKGPD--FIGKEVLKNQVENGTDRKLVGIEMIDKGIPRHEYEVLKDNK--EIGFITSGTQSPTLNKNVGLALINISYTEIGTEVDVKVRKR-----ILKAKIVPTPFYK 368          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_GEOTN (Aminomethyltransferase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 68/179 (37.99%), Postives = 98/179 (54.75%), Query Frame = -3
Query:  195 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 728
            TGEDG ++   +E A+ L +AIL   +E  V   GLGARD+LR EA L LYG ++   ++P+EAGL +A+  +   E  F+G   + +Q + GPP R VG          H       G   G +T+G  SP LKKNI +  VK+ +   G +V++++RGK       K   VPT +YK
Sbjct:  190 TGEDGFELYCQAEDAITLWEAILTAGAEDGVLPCGLGARDTLRFEACLPLYGQELSATISPLEAGLGFAV--KTEKEPPFIGQAVLKQQKEAGPPRRLVGIEMIDKGIPRHGYRVFAAGEEAGFVTTGTQSPTLKKNIGLALVKAEVAAIGQEVEVDIRGKR-----LKATIVPTPFYK 361          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_LEGPH7.823e-2337.79Aminomethyltransferase OS=Legionella pneumophila s... [more]
GCST_THISH1.022e-2242.20Aminomethyltransferase OS=Thioalkalivibrio sp. (st... [more]
GCST_NITEU1.022e-2240.11Aminomethyltransferase OS=Nitrosomonas europaea GN... [more]
GCST_SYMTH1.334e-2236.21Aminomethyltransferase OS=Symbiobacterium thermoph... [more]
GCST_LEGPC1.334e-2237.79Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_LEGPA1.743e-2237.79Aminomethyltransferase OS=Legionella pneumophila (... [more]
GCST_BURP81.743e-2240.91Aminomethyltransferase OS=Burkholderia phymatum (s... [more]
GCST_PROMA2.973e-2237.43Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_OCEIH2.973e-2236.46Aminomethyltransferase OS=Oceanobacillus iheyensis... [more]
GCST_GEOTN2.973e-2237.99Aminomethyltransferase OS=Geobacillus thermodenitr... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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