CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CHRVO (Aminomethyltransferase OS=Chromobacterium violaceum GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 71/173 (41.04%), Postives = 97/173 (56.07%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDGL+I VP+++A+     +       V   GLGARD+LRLEAG+ LYG+DM++ V+P+EAG+ W I     AE  F G E +  Q   G  +++VG    G    R   KV  E     G ITSG FSP LK +IA+  V +     G   ++++RG   D  + KMPFV
Sbjct:  190 TGEDGLEIMVPADQAISFFHQL---QAAGVSPIGLGARDTLRLEAGMNLYGHDMDETVSPLEAGMGWTIA-WEPAERKFNGREALEAQKAAGVKMKQVGLVLEGRGVLREGLKVVVESVGE-GVITSGTFSPTLKHSIAIARVPAA---TGAAAQVDLRGTLTDVRVVKMPFV 354          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNPW (Aminomethyltransferase OS=Synechococcus sp. (strain WH7803) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 62/171 (36.26%), Postives = 87/171 (50.88%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG+++ +  E   +L   ++      V   GLGARD+LRLEA + LYG DM+   TP EAGL W +         F G   + +  D GP  R VG    G     H       G   G ITSG +SP L++ IA+ YV + L K G ++ +E+RG+     + + PF
Sbjct:  200 TGEDGVELLLAREDGRNLWNRLVADG---VTPCGLGARDTLRLEAAMHLYGQDMDADTTPFEAGLGWLV--HLEMPSTFTGRAALERAADSGPSRRLVGLKLKGRAIARHGYPVIHNGEQAGAITSGSWSPTLQEAIALAYVPTALAKVGQELGVEIRGQVQAATVVRRPF 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_RALPJ (Aminomethyltransferase OS=Ralstonia pickettii (strain 12J) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.883e-22
Identity = 67/174 (38.51%), Postives = 99/174 (56.90%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ VP+ +   + + +L+     VR  GLGARD+LRLEAG+ LYG DM++HV+P++AGL W +    ++E  F G   +      G   + VG      G   R+H KV    G+  GEITSG FSP L  +IA+  +   +   GT V++E+R +     + K+PFV
Sbjct:  205 TGEDGFELVVPAAQIAGVWERLLQAG---VRPAGLGARDTLRLEAGMNLYGQDMDEHVSPLDAGLAWTVD--LQSERDFTGKAALQA---GGQREQFVGLILRDKGGVLRAHQKVITAAGD--GEITSGTFSPSLSLSIALARLPKEV-PVGTDVQVEIRDRKLTATVVKLPFV 367          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_THET8 (Aminomethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gcvT PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 67/176 (38.07%), Postives = 96/176 (54.55%), Query Frame = -3
Query:  204 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF-FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTK 728
            TGEDG ++ +  E A  +  A++E      +  GLGARDSLRLEAG  LYG+++ +   P+     W + K    E  FLG E +L Q       R VG    GG P   +  +    G P+G +TSGG+SP L++ IA+ YV+ G   A    ++EVRG+A    ++ +PFVP K
Sbjct:  189 TGEDGFELFLAPEDAEPVFLALVEAG---AKPAGLGARDSLRLEAGFPLYGHELTEETNPLCTPWAWVVKK----EKAFLGKEAMLAQACR---ERLVGLVLEGGIPREGYRVL--SGGRPVGRVTSGGYSPLLQRGIALAYVEEG---AEGPFQVEVRGRAVPAALSPLPFVPLK 349          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACCN (Aminomethyltransferase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gcvT PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.623e-22
Identity = 70/183 (38.25%), Postives = 103/183 (56.28%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEKSE-GKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +I   SE A+ + + +LE  E   ++  GLGARD+LR EA L LYG ++ + +TP+EAG+ +A+   + A+  F G E + +  + G P + VG      G P R+H  V+  +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  192 TGEDGFEIYCKSEDAIKIWEKLLEVGEEDSLKPCGLGARDTLRFEATLPLYGQELSKDITPIEAGIGFAVKTNKEAD--FFGKEVLKEYKENGAPRKLVGIEVIERGIP-RTHYPVYVGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAIDTEVEIEIRKKR-----VKAVVVPTPFYKRS 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_RALSO (Aminomethyltransferase OS=Ralstonia solanacearum GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 66/174 (37.93%), Postives = 99/174 (56.90%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ VP+ +   + + +L+     VR  GLGARD+LRLEAG+ LYG DM++HV+P++AGL W +    ++E  F G   +      G   + VG      G   R+H KV    G+  GEITSG FSP L ++IA+  +   +   G  V++E+R +     + K+PFV
Sbjct:  205 TGEDGFELVVPAAQIAGVWERLLQAG---VRPCGLGARDTLRLEAGMNLYGQDMDEHVSPLDAGLAWTVD--LQSERDFNGKAALAA---NGQRDQFVGLLLRDKGGVLRAHQKVITAAGD--GEITSGTFSPSLSQSIALARLPKDV-AIGADVQVEIRDRRLTATVVKLPFV 367          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PROMP (Aminomethyltransferase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGE+GL+I + ++ A++L   ++ K+   ++  GLGARD+LRLEAG+ LYG D+ +  TP EAGL W +      +  F G E + KQ   G   + VG    G           + G  IG ITSG +SP  +K IA  Y+++        V+I +RGK + G ITK  F
Sbjct:  200 TGENGLEILLSAKAAINLWDFLVSKN---IKPCGLGARDTLRLEAGMHLYGQDLNETTTPYEAGLGWLVHLENNHD--FFGREFLEKQSRFGINKKLVGLNIEGRAIGRKGCEVFKDGENIGTITSGSWSPTKQKAIAFAYIQNSYATLNNVVEILIRGKTFKGTITKRAF 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_PELPB (Aminomethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 66/177 (37.29%), Postives = 98/177 (55.37%), Query Frame = -3
Query:  207 TGEDGLKISVPSERAVDLAKAILEKS-EGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFA--GGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPT 728
            TGE G++I +P+  A+ L +A+ E   E  ++  GLGARD+LRLE G  LYG++++Q   P+EA L W +   +  +G F+G E    Q  EG   R V  F+  G    R H K+++     IG + SG  SP L++ +    V     K GT + +EVRG  + G I ++PFV T
Sbjct:  191 TGEKGVEICLPNAMALPLWEALFEAGKESGIQPIGLGARDTLRLEMGYSLYGHEIDQDTNPLEARLKWVV---KMGKGHFMGKEAC--QQVEGNLKRGVAGFSLDGRVLPRQHFKLYNSDRQEIGWVCSGTLSPTLQEPVGTCNVVREYLKPGTPILVEVRGSLHTGVIRRLPFVTT 362          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CORA7 (Aminomethyltransferase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 66/175 (37.71%), Postives = 107/175 (61.14%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGK-VRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAG-GPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYV--KSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ V +  A +L + +L+  E   ++  GL ARDSLRLEAG+ LYGN++ + +TPVEAG++ A  K+   E  F+GAE + ++ +EGP     G  +     AR+ S+V+  + N +G +TSG  SP L   +A+  +   +GL + G  V++++RGK Y   ++ +PF
Sbjct:  196 TGEDGFELIVYNSDAPELWEELLKAGEEYGIKPCGLAARDSLRLEAGMPLYGNELTRDITPVEAGMSRAFAKK---EQDFVGAEVLRQRAEEGPQAVITGLVSSQRRAARAGSEVYVGE-NKVGTVTSGQPSPTLGHPVALALIDTAAGL-EPGAAVEVDIRGKRYPFEVSALPF 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CHLP8 (Aminomethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 64/175 (36.57%), Postives = 101/175 (57.71%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILE--KSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPP-ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGE G++I +P+E A  L  A++   K++G ++  GLGARD+LRLE G  LYG++++Q V P+EA L W +   +  +  F+G ++  +Q++  P    VGF   G    R H KV++     IGE+ SG  SP L++ I    +     K GT + +E+RG    G + ++PFV
Sbjct:  191 TGEAGVEICLPNEEAEALWTALMAAGKNDG-IQPIGLGARDTLRLEMGYSLYGHEIDQTVNPLEARLKWVV---KMDKPNFIG-KQACQQVELDPRKSVVGFSLDGRAIPRQHFKVYNSDKQEIGEVCSGTVSPTLQEPIGTASLLRDYAKTGTPIFVEIRGTFQPGTVRRLPFV 360          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_CHRVO2.973e-2241.04Aminomethyltransferase OS=Chromobacterium violaceu... [more]
GCST_SYNPW3.883e-2236.26Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_RALPJ3.883e-2238.51Aminomethyltransferase OS=Ralstonia pickettii (str... [more]
GCST_THET86.623e-2238.07Aminomethyltransferase OS=Thermus thermophilus (st... [more]
GCST_BACCN6.623e-2238.25Aminomethyltransferase OS=Bacillus cereus subsp. c... [more]
GCST_RALSO8.650e-2237.93Aminomethyltransferase OS=Ralstonia solanacearum G... [more]
GCST_PROMP8.650e-2237.43Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_PELPB8.650e-2237.29Aminomethyltransferase OS=Pelodictyon phaeoclathra... [more]
GCST_CORA78.650e-2237.71Aminomethyltransferase OS=Corynebacterium aurimuco... [more]
GCST_CHLP88.650e-2236.57Aminomethyltransferase OS=Chlorobaculum parvum (st... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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