CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_CARHZ (Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 64/173 (36.99%), Postives = 94/173 (54.34%), Query Frame = -3
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVG--FFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG +I      A  +   +L      V+  GLGARD+LR EA L LYG+++   +TP+EAGL WA+   +     F+G E +L Q + G   + VG      G P + +  V +++G  +G +TSG F+P LKKN+AM  V     + GT+V + +RGK     +   PF
Sbjct:  191 TGEDGFEIYFAPNLATKIWNELLNLG---VKPAGLGARDTLRFEACLPLYGHELSAEITPLEAGLGWAVKFNKE---DFIGKEALLAQKNAGLKRKIVGLEMIGAGIPRQGYEIVFNQRG--VGFVTSGTFAPFLKKNLAMAMVDLEAAEIGTEVDVIIRGKGVRARVISRPF 355          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURA4 (Aminomethyltransferase OS=Burkholderia ambifaria (strain MC40-6) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = -3
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF------AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG ++ VP+     L  A+ +     VR  GLGARD+LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + + +   +G     VG          G   R+H KV    G   GEITSG FSP ++++IA   V + +H  G  + +++R K     + K+PFV
Sbjct:  198 TGEDGFEVIVPAVHVEALWTALQQNG---VRPCGLGARDTLRLEAGMNLYGQDMDETVSPLDAGLAWTVD--LSAPRDFVGRDALER---DGTRAAFVGLILQKENGKAGGVLRAHQKVVTPHGE--GEITSGTFSPSMQESIAFARVPAAVH-VGDTIHVQIRDKQLPARVVKLPFV 364          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACCQ (Aminomethyltransferase OS=Bacillus cereus (strain Q1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 72/183 (39.34%), Postives = 102/183 (55.74%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +I   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++ + +TPVEAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  192 TGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKPCGLGARDTLRFEATLPLYGQELSKDITPVEAGIGFAVKPNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACC7 (Aminomethyltransferase OS=Bacillus cereus (strain AH187) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 72/183 (39.34%), Postives = 102/183 (55.74%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +I   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++ + +TPVEAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  192 TGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKPCGLGARDTLRFEATLPLYGQELSKDITPVEAGIGFAVKPNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACC1 (Aminomethyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.650e-22
Identity = 72/183 (39.34%), Postives = 102/183 (55.74%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +I   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++ + +TPVEAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  192 TGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKPCGLGARDTLRFEATLPLYGQELSKDITPVEAGIGFAVKPNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_LEPBJ (Aminomethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 67/178 (37.64%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  210 TGEDGLKI--SVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF---AGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVP 728
            TGEDG +I  S+P    +    + L K +G +   GLGARD+LR+EA   LYG+++    TP+E+G+ W + +++     +  + KIL Q   G   + V F    AG P  R + +V D QGN IG+ TSG FSP LKK I +  +++   K G  ++IE+R +     IT  PF+P
Sbjct:  194 TGEDGFEIYSSIPFGLKLWSGLSELGKPQGLL-PCGLGARDTLRIEAKYPLYGHELNNQWTPIESGIGWIVKEKKNP---YFSSGKILSQKKNGTEFKIVAFALTEAGVP--RENFRVLDFQGNEIGKTTSGTFSPSLKKGIGLASIRTEKIKDGEPIQIEIREQPKQAIITTKPFIP 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACHK (Aminomethyltransferase OS=Bacillus thuringiensis subsp. konkukian GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 71/183 (38.80%), Postives = 102/183 (55.74%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +I   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++ + +TP+EAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  192 TGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQELSKDITPIEAGIGFAVKTNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACCZ (Aminomethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 71/183 (38.80%), Postives = 102/183 (55.74%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +I   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++ + +TP+EAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  192 TGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKPCGLGARDTLRFEATLPLYGQELSKDITPIEAGIGFAVKPNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACCR (Aminomethyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 71/183 (38.80%), Postives = 102/183 (55.74%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +I   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++ + +TP+EAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  192 TGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQELSKDITPIEAGIGFAVKTNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACC4 (Aminomethyltransferase OS=Bacillus cereus (strain B4264) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.130e-21
Identity = 71/183 (38.80%), Postives = 102/183 (55.74%), Query Frame = -3
Query:  189 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 728
            TGEDG +I   SE A  L + +LE  +E  ++  GLGARD+LR EA L LYG ++ + +TP+EAG+ +A+   + A+  F G   + +Q + G P + VG      G P R+H  V   +   IGE+TSG  SP LKK+I +  +        T+V+IE+R K       K   VPT +YK S
Sbjct:  192 TGEDGFEIYCKSEDAAKLWEKLLEVGAEEGLKACGLGARDTLRFEATLPLYGQELSKDITPIEAGIGFAVKTNKEAD--FFGKATLKEQKENGAPRKLVGIEVIERGIP-RTHYPVFIGE-EKIGEVTSGTQSPTLKKSIGLALIDVKYAAVDTEVEIEIRNKR-----VKAVVVPTPFYKRS 365          
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_CARHZ8.650e-2236.99Aminomethyltransferase OS=Carboxydothermus hydroge... [more]
GCST_BURA48.650e-2237.08Aminomethyltransferase OS=Burkholderia ambifaria (... [more]
GCST_BACCQ8.650e-2239.34Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC78.650e-2239.34Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC18.650e-2239.34Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_LEPBJ1.130e-2137.64Aminomethyltransferase OS=Leptospira borgpeterseni... [more]
GCST_BACHK1.130e-2138.80Aminomethyltransferase OS=Bacillus thuringiensis s... [more]
GCST_BACCZ1.130e-2138.80Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACCR1.130e-2138.80Aminomethyltransferase OS=Bacillus cereus (strain ... [more]
GCST_BACC41.130e-2138.80Aminomethyltransferase OS=Bacillus cereus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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