CX296843

Overview
NameCX296843
Unique NameCX296843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACFR (Aminomethyltransferase OS=Bacteroides fragilis GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 65/175 (37.14%), Postives = 95/175 (54.29%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TG  G ++    + A+ +  A+ E  +E  ++  GLGARD+LRLE G CLYGND++   +P+EAGL W     +  +G  F     + KQ  EG   + VGF     G P   + ++   +G+ IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  189 TGAGGFELYFYPDAAMKIWDAVFEAGAEFGIKPIGLGARDTLRLEMGFCLYGNDLDDTTSPIEAGLGWI---TKFVDGKNFTNRSMLEKQKAEGTVRKLVGFEMIDRGIPRHGY-ELTTAEGDKIGVVTSGTMSPIRKIGIGMGYVKPEYSKIGTEICIDMRGRKLKAVVVKPPF 359
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BACFN (Aminomethyltransferase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.475e-21
Identity = 65/175 (37.14%), Postives = 95/175 (54.29%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILEK-SEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEG-GFLGAEKILKQLDEGPPVRRVGF--FAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TG  G ++    + A+ +  A+ E  +E  ++  GLGARD+LRLE G CLYGND++   +P+EAGL W     +  +G  F     + KQ  EG   + VGF     G P   + ++   +G+ IG +TSG  SP  K  I MGYVK    K GT++ I++RG+     + K PF
Sbjct:  189 TGAGGFELYFYPDAAMKIWDAVFEAGAEFGIKPIGLGARDTLRLEMGFCLYGNDLDDTTSPIEAGLGWI---TKFVDGKNFTNRSMLEKQKAEGTVRKLVGFEMIDRGIPRHGY-ELTTAEGDKIGVVTSGTMSPIRKIGIGMGYVKPEYSKIGTEICIDMRGRKLKAVVVKPPF 359
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNP6 (Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 60/171 (35.09%), Postives = 90/171 (52.63%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ +P   A+ L + +   +   V   GLGARD+LRLEA + LYG++++    P+EAGL W +   R  +  FLG +++++    G   R VG    G     H          +G +TSG +SP L K IA+ YV   L   G ++ +E+RGK     + K PF
Sbjct:  200 TGEDGCEVMLPPAAAITLWQQL---TAAGVVPCGLGARDTLRLEAAMPLYGHELDTDTNPLEAGLGWVVHLDRNPD--FLGRDRLVQAKTNGLERRLVGLELPGRNIARHGYPVAIADTTVGIVTSGSWSPTLSKAIALAYVPPALANLGQELWVEIRGKQVPATVVKRPF 365
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_SYNE7 (Aminomethyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 60/171 (35.09%), Postives = 90/171 (52.63%), Query Frame = -3 
Query:  216 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPF 728
            TGEDG ++ +P   A+ L + +   +   V   GLGARD+LRLEA + LYG++++    P+EAGL W +   R  +  FLG +++++    G   R VG    G     H          +G +TSG +SP L K IA+ YV   L   G ++ +E+RGK     + K PF
Sbjct:  200 TGEDGCEVMLPPAAAITLWQQL---TAAGVVPCGLGARDTLRLEAAMPLYGHELDTDTNPLEAGLGWVVHLDRNPD--FLGRDRLVQAKTNGLERRLVGLELPGRNIARHGYPVAIADTTVGIVTSGSWSPTLSKAIALAYVPPALANLGQELWVEIRGKQVPATVVKRPF 365
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURPS (Aminomethyltransferase OS=Burkholderia pseudomallei GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I VP+     L  A+ E+    VR  GLGARD+LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V   +   G  V +++R K     + K+PFV
Sbjct:  198 TGEDGFEIIVPATHVEALWNALAERG---VRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVD--LSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGG-VLRAHQKVATPHGE--GEITSGTFSPSMQESIAFARVPKDV-AIGDTVHVQIRDKQLPARVVKLPFV 364
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURP6 (Aminomethyltransferase OS=Burkholderia pseudomallei (strain 668) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I VP+     L  A+ E+    VR  GLGARD+LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V   +   G  V +++R K     + K+PFV
Sbjct:  198 TGEDGFEIIVPATHVEALWNALAERG---VRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVD--LSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGG-VLRAHQKVATPHGE--GEITSGTFSPSMQESIAFARVPKDV-AIGDTVHVQIRDKQLPARVVKLPFV 364
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURP0 (Aminomethyltransferase OS=Burkholderia pseudomallei (strain 1106a) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I VP+     L  A+ E+    VR  GLGARD+LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V   +   G  V +++R K     + K+PFV
Sbjct:  198 TGEDGFEIIVPATHVEALWNALAERG---VRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVD--LSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGG-VLRAHQKVATPHGE--GEITSGTFSPSMQESIAFARVPKDV-AIGDTVHVQIRDKQLPARVVKLPFV 364
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURMA (Aminomethyltransferase OS=Burkholderia mallei GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I VP+     L  A+ E+    VR  GLGARD+LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V   +   G  V +++R K     + K+PFV
Sbjct:  198 TGEDGFEIIVPATHVEALWNALAERG---VRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVD--LSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGG-VLRAHQKVATPHGE--GEITSGTFSPSMQESIAFARVPKDV-AIGDTVHVQIRDKQLPARVVKLPFV 364
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURM9 (Aminomethyltransferase OS=Burkholderia mallei (strain NCTC 10229) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I VP+     L  A+ E+    VR  GLGARD+LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V   +   G  V +++R K     + K+PFV
Sbjct:  198 TGEDGFEIIVPATHVEALWNALAERG---VRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVD--LSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGG-VLRAHQKVATPHGE--GEITSGTFSPSMQESIAFARVPKDV-AIGDTVHVQIRDKQLPARVVKLPFV 364
[Close]
BLAST of CX296843 vs. ExPASy Swiss-Prot
Match: GCST_BURM7 (Aminomethyltransferase OS=Burkholderia mallei (strain NCTC 10247) GN=gcvT PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.927e-21
Identity = 68/176 (38.64%), Postives = 98/176 (55.68%), Query Frame = -3 
Query:  213 TGEDGLKISVPSERAVDLAKAILEKSEGKVRXTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKI----LKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV 728
            TGEDG +I VP+     L  A+ E+    VR  GLGARD+LRLEAG+ LYG DM++ V+P++AGL W +     A   F+G + +     +    G  +++    AGG   R+H KV    G   GEITSG FSP ++++IA   V   +   G  V +++R K     + K+PFV
Sbjct:  198 TGEDGFEIIVPATHVEALWNALAERG---VRPCGLGARDTLRLEAGMNLYGQDMDESVSPLDAGLAWTVD--LSAPRAFVGRDALEAHGSRAAFVGLILQKENGRAGG-VLRAHQKVATPHGE--GEITSGTFSPSMQESIAFARVPKDV-AIGDTVHVQIRDKQLPARVVKLPFV 364
The following BLAST results are available for this feature:
BLAST of CX296843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
GCST_BACFR1.475e-2137.14Aminomethyltransferase OS=Bacteroides fragilis GN=... [more]
GCST_BACFN1.475e-2137.14Aminomethyltransferase OS=Bacteroides fragilis (st... [more]
GCST_SYNP61.927e-2135.09Aminomethyltransferase OS=Synechococcus sp. (strai... [more]
GCST_SYNE71.927e-2135.09Aminomethyltransferase OS=Synechococcus elongatus ... [more]
GCST_BURPS1.927e-2138.64Aminomethyltransferase OS=Burkholderia pseudomalle... [more]
GCST_BURP61.927e-2138.64Aminomethyltransferase OS=Burkholderia pseudomalle... [more]
GCST_BURP01.927e-2138.64Aminomethyltransferase OS=Burkholderia pseudomalle... [more]
GCST_BURMA1.927e-2138.64Aminomethyltransferase OS=Burkholderia mallei GN=g... [more]
GCST_BURM91.927e-2138.64Aminomethyltransferase OS=Burkholderia mallei (str... [more]
GCST_BURM71.927e-2138.64Aminomethyltransferase OS=Burkholderia mallei (str... [more]

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Properties
Property NameValue
Genbank descriptionC05803D10SK FerrChloL1 Citrus clementina cDNA clone C05803D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296843 ID=CX296843; Name=CX296843; organism=Citrus clementina; type=EST; length=730bp
CCGAATTCGGCACGAGGTTTTGCTTTAAACTAAACACTTTTATTCAGGCA
ACAAGAATCATAAGTATTTGCAGAATTAAAGAACTGCTAGCAATAAAGAC
AGTAATCTCGAGCAGTCAATGTTTATGAAACAAGTCAAAACAGGAATCGA
GTAGTGCTTCCATAAGCAGAACCAACAAAGATGTACTAAGACGGCTTGTA
GTATTTTGTTGGCACAAATGGCATTTTAGTGATGTTTCCATCGTAGGCTT
TTCCTCGAACCTCAATCTTAACTTTTGTGCCTGCCTTGTGCAATCCAGAT
TTTACATATCCCATGGCTATATTCTTCTTGAGGCAGGGGCTGAATCCTCC
ACTGGTAATTTCTCCAATGGGATTCCCTTGCTCATCATGAACCTTACTGT
GTGATCTGGCAGGCGGACCTCCAGCGAAGAATCCAACACGTCTGACTGGC
GGACCTTCGTCAAGTTGTTTGAGTATTTTCTCAGCACCTAGAAAGCCACC
TTCTGCTCTCCTCCTCTTTCCTATGGCCCATGTCAGTCCAGCTTCTACAG
GTGTCACGTGTTGTTCCATGTCATTACCATATAAACATAAGCCAGCTTCA
AGTCGGAGACTGTCTCGAGCACCGAGACCTGTNCACCTCACCTTTCCTTC
AGATTTCTCCAGAATTGCTTTGGCAAGATCCACTGCACGCTCAGATGGAA
CAGAGATTTTCAATCCATCTTCACCAGTGT
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