CX296846

Overview
NameCX296846
Unique NameCX296846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11611 contig Ccv1_Contig11611:594..1350. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_STRAT (GTP pyrophosphokinase OS=Streptomyces antibioticus GN=relA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.798e-33
Identity = 80/207 (38.65%), Postives = 126/207 (60.87%), Query Frame = 3
Query:   36 LSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKEL 656
            +  + L  + +A  +A   H GQKR+SG+P+I HP+ V  IL EL +D  ++ AGLLHD+ EDT     + +  +FG  V  +V+G TK+ K+            +  +A+ +R+M +AM ++ RV+++KLADRLHNMRT+ ++   KQ   A ETL+++APLA  LGM  IK ELE+L+F     + Y ++ R VA+   + ++ L
Sbjct:  116 IETSTLRQIEKAYQVAERWHRGQKRKSGDPYITHPLAVTTILAELGMDPATLMAGLLHDSREDTEY-GLDDLRRDFGDVVGLLVDGVTKLDKV---------KFGEAAQAETVRKMVVAMAKDPRVLVIKLADRLHNMRTMRYLKREKQEKKARETLEIYAPLAHRLGMNTIKWELEDLAFAILYPKMYDEIVRLVAERAPKRDEYL 312          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: SPOT_MYCPN (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Mycoplasma pneumoniae GN=spoT PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 73/229 (31.88%), Postives = 125/229 (54.59%), Query Frame = 3
Query:   15 LRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 701
            L+ T    +P  + L+ +AL  + + H  QKR SGEPF IHP+  A  L E  +D  ++ AGLLHD +EDT V   + +   FG  +  +V   TK++   K K +  N   +D+    L  + ++  +EV  +++KLADRL N+ ++  +   KQ  IA ETL+++A +A  +GMY +K++L +LSF   + +++     ++      ++ E     K L + +E +Q
Sbjct:   25 LQKTAQKFAPEVVALITKALDYSKKWHGEQKRLSGEPFFIHPLRTALRLVEWNMDSNTVCAGLLHDIIEDTQVTEAD-LTAIFGKEITDLVVKVTKITSESK-KQRQLNRKKEDLNLKSLVNIAMSSQQEVNALVLKLADRLDNISSIEFLAVEKQKIIAKETLELYAKIAGRIGMYPVKTQLADLSFKVLDPKNFNNTLSKINQQKVFYDNEWGNFKKQLEEMLEQNQ 251          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: SPOT_MYCGE (Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Mycoplasma genitalium GN=spoT PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.558e-27
Identity = 71/218 (32.57%), Postives = 121/218 (55.50%), Query Frame = 3
Query:   48 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQ 701
            E+EL+ +A   A   H+ QKR SGEPF IHP+  A  L E  +D  +I AGLLHD +EDT+  T   I   F   +  +V   TK++   K K ++  +  +++       + +   +E+ V+++KLADRL N+ ++  +P  KQ  IA ETL+++A +A  +GMY +K++L +LSF   + ++Y     ++      ++ E +   + L K +  +Q
Sbjct:   23 EIELINKAFYHAKTWHENQKRLSGEPFFIHPLRTALSLVEWNMDPITICAGLLHDIIEDTDQ-TEANIAMIFSKEIAELVTKVTKITNESK-KQRHLKNKKENLNLKSFVNIAINSQQEINVMVLKLADRLDNIASIEFLPIEKQKVIAKETLELYAKIAGRIGMYPVKTKLADLSFKVLDLKNYDNTLSKINKQKVFYDNEWDNFKQQLKKILAQNQ 238          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_SHIFL (GTP pyrophosphokinase OS=Shigella flexneri GN=relA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 53/174 (30.46%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  141 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEE 662
            VE+  IL  L +D +++ A LL   + D NVV+ + + E  G +V  ++ G   ++ + +LK  + + SV   + D++R+M LAM ++ R +++KLA+R+ ++R +   P  ++   A E   ++APLA  LG+ Q+K ELE+  F Y +  +Y ++ + + +   + E  +EE
Sbjct:   60 VEMVEILSTLSMDIDTLRAALLFP-LADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTD-SVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEE 231          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_ECOLI (GTP pyrophosphokinase OS=Escherichia coli (strain K12) GN=relA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 53/174 (30.46%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  141 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEE 662
            VE+  IL  L +D +++ A LL   + D NVV+ + + E  G +V  ++ G   ++ + +LK  + + SV   + D++R+M LAM ++ R +++KLA+R+ ++R +   P  ++   A E   ++APLA  LG+ Q+K ELE+  F Y +  +Y ++ + + +   + E  +EE
Sbjct:   60 VEMVEILSTLSMDIDTLRAALLFP-LADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTD-SVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEE 231          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_ECOL6 (GTP pyrophosphokinase OS=Escherichia coli O6 GN=relA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 53/174 (30.46%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  141 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEE 662
            VE+  IL  L +D +++ A LL   + D NVV+ + + E  G +V  ++ G   ++ + +LK  + + SV   + D++R+M LAM ++ R +++KLA+R+ ++R +   P  ++   A E   ++APLA  LG+ Q+K ELE+  F Y +  +Y ++ + + +   + E  +EE
Sbjct:   60 VEMVEILSTLSMDIDTLRAALLFP-LADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTD-SVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEE 231          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_ECO57 (GTP pyrophosphokinase OS=Escherichia coli O157:H7 GN=relA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.478e-19
Identity = 53/174 (30.46%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  141 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEE 662
            VE+  IL  L +D +++ A LL   + D NVV+ + + E  G +V  ++ G   ++ + +LK  + + SV   + D++R+M LAM ++ R +++KLA+R+ ++R +   P  ++   A E   ++APLA  LG+ Q+K ELE+  F Y +  +Y ++ + + +   + E  +EE
Sbjct:   60 VEMVEILSTLSMDIDTLRAALLFP-LADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTD-SVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEE 231          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_PHOAS (GTP pyrophosphokinase OS=Photobacterium angustum (strain S14 / CCUG 15956) GN=relA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 48/162 (29.63%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  144 EVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVAD 629
            E+  IL  L +D +++ A LL+  VE     T + ++EE+  T+  +V+G  ++  + +LK   E  + Q  + D++R+M L+M ++ R +++KLA+R+ N+R +   P   + + A E   ++APLA  LG+ Q+K E+E+ +F Y + + Y ++ +++++
Sbjct:   60 ELVEILVTLSMDADTLIAALLYPLVEGGCYST-DALKEEYSGTILHLVQGVEQMCAISQLKSTAEE-TAQAAQVDNIRRMLLSMVDDFRCVVIKLAERICNLREVKDQPDEVRRAAAQECANIYAPLANRLGIGQLKWEIEDYAFRYQHPDTYKQIAKQLSE 219          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: RELA_HAEIN (GTP pyrophosphokinase OS=Haemophilus influenzae GN=relA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.617e-19
Identity = 56/174 (32.18%), Postives = 100/174 (57.47%), Query Frame = 3
Query:  141 VEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIAT-ETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELE 659
            VE+  IL EL +D E++   +L   V +  +  +E ++E+FGA + ++++G  ++  + +L   N +HS   ++ D++R+M LAM ++ R +I+KLA+R+  +R   H    +   +A  E   ++APLA  LG+ Q+K ELE+  F Y + E Y    R +A L +E   + E
Sbjct:   63 VEMVEILHELNMDAETLLTAMLFPIVAN-KLTDWESLKEKFGAKITKLLKGVLEMDNIRQL---NASHSANALQVDNVRRMLLAMVDDFRCVIIKLAERITFLRDAEHRCAEEDKVLAVKECSYIYAPLANRLGIGQLKWELEDYCFRYLHPEQY----RAIAKLLQERRLDRE 228          
BLAST of CX296846 vs. ExPASy Swiss-Prot
Match: HDDC3_DANRE (HD domain-containing protein 3 OS=Danio rerio GN=hddc3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 58/141 (41.13%), Postives = 77/141 (54.61%), Query Frame = 3
Query:   81 AFEAHDGQKRRS--GEPFIIHPVEVARIL---GELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSS 488
            A E H  Q+ +   G P+I HP+ VARIL   GE+  D E I A LLHDTVEDT+  TFE +E  FGATV RIV+G T    L K + + +             Q+  A     +  +VKLAD+L+N+R L+   P   S+
Sbjct:   16 AAEKHRNQRHKDPEGTPYINHPIGVARILSHEGEIT-DVEVIQAALLHDTVEDTDT-TFEELESVFGATVARIVQGVTDDKSLPKAERERQ-------------QVEHAPHCSHQAKLVKLADKLYNLRDLNRCTPEGWSA 141          
The following BLAST results are available for this feature:
BLAST of CX296846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
RELA_STRAT1.798e-3338.65GTP pyrophosphokinase OS=Streptomyces antibioticus... [more]
SPOT_MYCPN3.881e-2831.88Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
SPOT_MYCGE9.558e-2732.57Probable guanosine-3',5'-bis(diphosphate) 3'-pyrop... [more]
RELA_SHIFL1.478e-1930.46GTP pyrophosphokinase OS=Shigella flexneri GN=relA... [more]
RELA_ECOLI1.478e-1930.46GTP pyrophosphokinase OS=Escherichia coli (strain ... [more]
RELA_ECOL61.478e-1930.46GTP pyrophosphokinase OS=Escherichia coli O6 GN=re... [more]
RELA_ECO571.478e-1930.46GTP pyrophosphokinase OS=Escherichia coli O157:H7 ... [more]
RELA_PHOAS3.293e-1929.63GTP pyrophosphokinase OS=Photobacterium angustum (... [more]
RELA_HAEIN5.617e-1932.18GTP pyrophosphokinase OS=Haemophilus influenzae GN... [more]
HDDC3_DANRE5.440e-1441.13HD domain-containing protein 3 OS=Danio rerio GN=h... [more]

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Properties
Property NameValue
Genbank descriptionC05803E01SK FerrChloL1 Citrus clementina cDNA clone C05803E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296846 ID=CX296846; Name=CX296846; organism=Citrus clementina; type=EST; length=757bp
GGTTGTGGGAGGATCTTAGGCCCACCATATCATACCTTTCACCTAATGAA
TTGGAATTGGTCCGTAGAGCTCTGATGTTGGCTTTTGAGGCGCATGATGG
TCAGAAAAGACGGAGTGGAGAGCCTTTCATCATTCATCCAGTTGAAGTTG
CTCGTATTCTGGGTGAACTTGAACTGGATTGGGAATCTATTGCTGCGGGA
TTACTACATGACACAGTTGAAGATACAAATGTTGTTACTTTTGAAAGAAT
AGAGGAGGAGTTTGGAGCTACTGTACGCCGCATTGTAGAGGGAGAGACTA
AGGTATCAAAGCTGGGAAAGTTAAAGTGTAAGAATGAAAACCATTCAGTG
CAAGATGTTAAAGCTGATGACCTACGGCAAATGTTTCTAGCCATGACTGA
GGAGGTCCGTGTTATCATAGTCAAATTGGCTGATAGATTGCATAACATGC
GCACTCTTTCACACATGCCTCCACATAAGCAGTCCAGCATTGCAACGGAG
ACATTGCAGGTCTTTGCTCCCTTGGCAAAATTGTTAGGGATGTACCAAAT
TAAGTCTGAACTTGAAAATCTATCCTTTATGTACACAAATGCTGAAGATT
ATGCCAAGGTCAAAAGAAGAGTTGCAGACCTCTATAAAGAACATGAAAAA
GAACTTGAGGAGGCGAACAAAATTTTGATGAAGAAGATTGAGGATGATCA
GTTCTTGGACCTTATGACTGTCAAACTGAAATTCGCTCTGTATGTAAGGA
GCCTTAC
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