CX297911

Overview
NameCX297911
Unique NameCX297911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
RindPdig24cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 2
Query:   26 HITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNN----KDIEALKADVEKFASSFDMPG 307
            HI  NKN   GD SAL PGG+R+GTPA+TSRG  E+DFE++G+F+H  V +  +   E GK LKDF      N    +++  L   VE+F+  F++PG
Sbjct:  410 HIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.491e-19
Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 307
            I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF+++  F+HR + LTL+IQ   G    LK+F + L     +++ + AL+A+VE FA+ F +PG
Sbjct:  382 IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHHRAVAALRAEVESFATLFPLPG 480          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.669e-18
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYG--KLLKDFNKGLV----NNKDIEALKADVEKFASSFDMPG 307
            I  NKN   GD SAL P G+R+GTPA+TSRGLLE+DF ++  F+HR + LTL+IQ   G    LK+F + L     + + + AL+A+VE FA+ F +PG
Sbjct:  382 IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGAEEHQRAVTALRAEVESFATLFPLPG 480          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.180e-18
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 337
            +HI  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++  F   AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  409 VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.282e-18
Identity = 48/109 (44.04%), Postives = 69/109 (63.30%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKE-YGKLLKDFNKGLVNN---KDIEALKADVEKFASSFDMPGFKMSEMKYKD 337
            +HI  NKN V GD SA+ PGG+R+GTPA+TSRG +E+DF ++      AV L ++I+ E  G  LKDF   + ++    +I  L+ DVE++A  F   GF+   MKYK+
Sbjct:  409 VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.847e-15
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 310
            IT NKN   GD SA+ PGG+R+G PA+TSRG LE DF ++  F+   V + LE++ +  K L+DF   L+ + +     AD    VE+FA +F MPGF
Sbjct:  405 ITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTK-LQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGF 501          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.571e-15
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQ----KEYGKLLKDFNKGLVNN--KDIEALKADVEKFASSFDMP 304
            ++IT NKNAV GD SAL PGG+RIGTPAMTSRG  E DFE++  F+  AV L  EIQ    KE  K  KDF   +  +    I  LK ++  ++++F +P
Sbjct:  372 INITCNKNAVPGDKSALTPGGLRIGTPAMTSRGFGEADFEKVAVFVDEAVKLCKEIQASLPKEANK-QKDFKAKIATSDIPRINELKQEIAAWSNTFPLP 470          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKD----IEALKADVEKFASSFDMPGF 310
            IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++ +  K L+DF   L+ + +    +  L+  VE+FA +F MPGF
Sbjct:  405 ITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGF 501          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 2
Query:   29 ITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGKLLKDFNKGLVNNKDIEALKAD----VEKFASSFDMPGF 310
            IT NKN   GD SA+ PGG+R+G PA+TSR   E DF ++ +F+   V + LE++++  K L+DF   L+ + +     AD    V++FA +F MPGF
Sbjct:  405 ITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAK-LQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501          
BLAST of CX297911 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 40/97 (41.24%), Postives = 65/97 (67.01%), Query Frame = 2
Query:   23 LHITVNKNAVFGDSSALAPGGVRIGTPAMTSRGLLEKDFEQIGEFLHRAVTLTLEIQKEYGK---LLKDFNKGLVNNKD-IEALKADVEKFASSFDM 301
            ++I +NKN++ GD SAL PGGVRIG PAMT+RGL E+DF++I  ++  AV    E+Q +  K    LKDF   +  + + ++A++ ++ ++A SF +
Sbjct:  372 INIALNKNSIPGDKSALVPGGVRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDSEKLKAVRDEIYQWAGSFPL 468          
The following BLAST results are available for this feature:
BLAST of CX297911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GLYC_CAEBR7.491e-1945.92Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_BOVIN7.491e-1948.48Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYC_SHEEP1.669e-1848.48Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYM_FLAPR2.180e-1844.95Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYN_FLAPR8.282e-1844.04Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_BOVIN3.847e-1544.90Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR8.571e-1548.00Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]
GLYM_HUMAN3.257e-1441.84Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT4.254e-1441.84Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CANAL9.476e-1441.24Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]

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Properties
Property NameValue
Genbank descriptionC06006E09SK RindPdig24 Citrus clementina cDNA clone C06006E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX297911 ID=CX297911; Name=CX297911; organism=Citrus clementina; type=EST; length=577bp
GATTCGGCCGAGGCTGTGACCTTTGCACATTACTGTGAACAAGAATGCTG
TGTTTGGTGACAGCAGTGCCTTGGCCCCTGGAGGAGTAAGAATCGGTACT
CCTGCCATGACTTCCAGAGGTTTGTTGGAGAAGGACTTCGAGCAAATTGG
AGAGTTTCTTCACCGCGCTGTGACCCTCACGTTGGAAATTCAAAAGGAGT
ATGGAAAGCTCTTGAAGGACTTCAACAAGGGTCTGGTGAACAACAAGGAC
ATCGAGGCCCTCAAGGCTGATGTTGAGAAGTTCGCCAGCTCATTTGACAT
GCCCGGCTTTAAAATGTCCGAGATGAAGTACAAGGATTAGGTCTCAAAGT
ATCATCATTATTGTTACTGTGTTGTTAGCAACTCTTTAGTGTTGAAAAAC
AGAAAGAGAAGAAAAAAAATTGCATGCATCTTTGCCTTTTGTTGTCCTAG
GTTTAAACGCTTTCGTTTTAATTTTTTTTTTTTTTAATTGGTACCCACCA
TATTGTGAAAGCGAGATCCGTTTCTCTTTGGTCAAATGATGATTGTTCAT
CTACAAATAAAACAACAAATTTATGTA
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